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- Publication . Article . Other literature type . 2020Open AccessAuthors:Maxime Lobry; Médéric Loyez; Karima Chah; Eman M. Hassan; Erik Goormaghtigh; Maria C. DeRosa; Ruddy Wattiez; Christophe Caucheteur;Maxime Lobry; Médéric Loyez; Karima Chah; Eman M. Hassan; Erik Goormaghtigh; Maria C. DeRosa; Ruddy Wattiez; Christophe Caucheteur;Publisher: Optica Publishing GroupCountries: Belgium, Canada
In the biomedical detection context, plasmonic tilted fiber Bragg gratings (TFBGs) have been demonstrated to be a very accurate and sensitive sensing tool, especially well-adapted for biochemical detection. In this work, we have developed an aptasensor following a triple strategy to improve the overall sensing performances and robustness. Single polarization fiber (SPF) is used as biosensor substrate while the demodulation is based on tracking a peculiar feature of the lower envelope of the cladding mode resonances spectrum. This method is highly sensitive and yields wavelength shifts several tens of times higher than the ones reported so far based on the tracking of individual modes of the spectrum. An amplification of the response is further performed through a sandwich assay by the use of specific antibodies. These improvements have been achieved on a biosensor developed for the detection of the HER2 (Human Epidermal Growth Factor Receptor-2) protein, a relevant breast cancer biomarker. These advanced developments can be very interesting for point-of-care biomedical measurements in a convenient practical way.
Top 1% in popularityTop 1% in popularityTop 10% in influencePopularity: Citation-based measure reflecting the current impact.Top 10% in influenceInfluence: Citation-based measure reflecting the total impact.add Add to ORCIDPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product. - Publication . Article . Other literature type . 2021Open AccessAuthors:H.E. James Hammond; Sergio García-Tejero; Greg R. Pohl; David W. Langor; John R. Spence;H.E. James Hammond; Sergio García-Tejero; Greg R. Pohl; David W. Langor; John R. Spence;Publisher: Pensoft Publishers
Epigaeic beetle assemblages were surveyed using continuous pitfall trapping during the summers of 1992 and 1993 in six widely geographically distributed locations in Alberta’s aspen-mixedwood forests prior to initial forest harvest. Species composition and turnover (β-diversity) were evaluated on several spatial scales ranging from Natural Regions (distance between samples 120–420 km) to pitfall traps (40–60 m). A total of 19,885 ground beetles (Carabidae) representing 40 species and 12,669 rove beetles (non-AleocharinaeStaphylinidae) representing 78 species was collected. Beetle catch, species richness, and diversity differed significantly among the six locations, as did the identity of dominant species. Beetle species composition differed significantly between the Boreal Forest and Foothills Natural Regions for both taxa. Staphylinidae β-diversity differed significantly between Natural Regions, whereas Carabidae β-diversity differed among locations. Climate variables such as number of frost-free days, dry periods, and mean summer temperatures were identified as significant factors influencing beetle assemblages at coarse spatial scales, whereas over- and understory vegetation cover, litter depth, shade, slope, and stand age influenced beetle assemblages at finer spatial scales. Significant interannual variation in assemblage structure was noted for both taxa. Because composition of epigaeic beetle assemblages differed across spatial scales, forest management strategies based only on generalized understanding of a single location will be ineffective as conservation measures. In addition, site history and geographic variation significantly affect species distributions of these two beetle families across the landscape. Thus, we underscore Terry Erwin’s suggestion that biodiversity assessments focused on species assemblages at different spatial scales provide a sound approach for understanding biodiversity change and enhancing conservation of arthropod biodiversity.
Top 10% in popularityTop 10% in popularityAverage/low influencePopularity: Citation-based measure reflecting the current impact.Average/low influenceInfluence: Citation-based measure reflecting the total impact.add Add to ORCIDPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product. - Publication . Other literature type . 2014Open Access EnglishAuthors:Stein, Claire Simpson; Aaron Goldenberg; Rob Culverhouse; Denise Daley; Robert Igo; Gail Jarvik; Diptasri Mandal; Deborah Mascalzoni; Courtney Montgomery; Brandon Pierce; Rosemarie Plaetke; Sanjay Shete; Katrina Goddard; Catherine;Stein, Claire Simpson; Aaron Goldenberg; Rob Culverhouse; Denise Daley; Robert Igo; Gail Jarvik; Diptasri Mandal; Deborah Mascalzoni; Courtney Montgomery; Brandon Pierce; Rosemarie Plaetke; Sanjay Shete; Katrina Goddard; Catherine;Publisher: Multidisciplinary Digital Publishing Institute
The underlying ethos of dbGaP is that access to these data by secondary data analysts facilitates advancement of science. NIH has required that genome-wide association study data be deposited in the Database of Genotypes and Phenotypes (dbGaP) since 2003. In 2013, a proposed updated policy extended this requirement to next-generation sequencing data. However, recent literature and anecdotal reports suggest lingering logistical and ethical concerns about subject identifiability, informed consent, publication embargo enforcement, and difficulty in accessing dbGaP data. We surveyed the International Genetic Epidemiology Society (IGES) membership about their experiences. One hundred and seventy five (175) individuals completed the survey, a response rate of 27%. Of respondents who received data from dbGaP (43%), only 32% perceived the application process as easy but most (75%) received data within five months. Remaining challenges include difficulty in identifying an institutional signing official and an overlong application process. Only 24% of respondents had contributed data to dbGaP. Of these, 31% reported local IRB restrictions on data release; an additional 15% had to reconsent study participants before depositing data. The majority of respondents (56%) disagreed that the publication embargo period was sufficient. In response, we recommend longer embargo periods and use of varied data-sharing models rather than a one-size-fits-all approach.
Average/low popularityAverage/low popularityAverage/low influencePopularity: Citation-based measure reflecting the current impact.Average/low influenceInfluence: Citation-based measure reflecting the total impact. - Publication . Other literature type . 2014Open Access EnglishAuthors:Waldner, Lianne McLeod; Lalita Bharadwaj; Cheryl;Waldner, Lianne McLeod; Lalita Bharadwaj; Cheryl;Publisher: Multidisciplinary Digital Publishing Institute
A cross-sectional study investigated risk factors associated with choices to drink bottled water and tap water in rural Saskatchewan. Of 7,500 anonymous postal questionnaires mailed out, 2,065 responses were analyzed using generalized linear mixed models. Those who reported a water advisory (p < 0.001) or living in the area for £10 years (p = 0.01) were more likely to choose bottled water. Those who reported tap water was not safe to drink were more likely to choose bottled water, an effect greater for those who had no aesthetic complaints (p ≤ 0.001), while those with aesthetic complaints were more likely to choose bottled water if they believed the water was safe (p < 0.001). Respondents who treated their water and did not use a community supply were more likely to choose bottled water (p < 0.001), while those who did not treat their water were more likely to choose bottled water regardless of whether a community supply was used (p < 0.001). A similar pattern of risk factors was associated with a decreased likelihood of consuming tap water daily; however, the use of a community water supply was not significant. Understanding the factors involved in drinking water choices could inform public health education efforts regarding water management in rural areas.
Average/low popularityAverage/low popularityAverage/low influencePopularity: Citation-based measure reflecting the current impact.Average/low influenceInfluence: Citation-based measure reflecting the total impact. - Publication . Article . 2020Open AccessAuthors:T.R.R. Pearman; Katleen Robert; Alexander Callaway; Robert Hall; C. Lo Iacono; Veerle A.I. Huvenne;T.R.R. Pearman; Katleen Robert; Alexander Callaway; Robert Hall; C. Lo Iacono; Veerle A.I. Huvenne;
handle: 10261/216488
Publisher: Elsevier BVCountries: United Kingdom, SpainProject: UKRI | SPITFIRE - the Southampto... (NE/L002531/1), EC | HABISS (890815), EC | iAtlantic (818123), EC | CODEMAP (258482)Submarine canyons are associated with increased biodiversity, including cold-water coral (CWC) colonies and reefs which are features of high conservation value that are under increasing anthropogenic pressure. Effective spatial management and conservation of these features requires accurate distribution maps and a deeper understanding of the processes that generate the observed distribution patterns. Predictive distribution modelling offers a powerful tool in the deep sea, where surveys are constrained by cost and technological capabilities. To date, predictive distribution modelling in canyons has focussed on integrating groundtruthed acoustically acquired datasets as proxies for environmental variables thought to influence faunal patterns. Physical oceanography is known to influence faunal patterns but has rarely been explicitly included in predictive distribution models of canyon fauna, thereby omitting key information required to adequately capture the species-environment relationships that form the basis of predictive distribution modelling. In this study, acoustic, oceanographic and biological datasets were integrated to undertake high-resolution predictions of benthic megafaunal diversity and CWC distribution within Whittard Canyon, North-East Atlantic. The main aim was to investigate which environmental variables best predict faunal patterns in canyons and to assess whether including oceanographic data improves predictive modelling. General additive models, random forests and boosted regression trees were used to build predictive maps for CWC occurrence, megafaunal abundance, species richness and biodiversity. To provide more robust predictions, ensemble techniques that summarise the variation in predictions and uncertainties between modelling approaches were applied to build final maps. Model performance improved with the inclusion of oceanographic data. Ensemble maps identified areas of elevated current speed that coincided with steep ridges and escarpment walls as the areas most likely to harbour CWCs and increased biodiversity, probably linked to local hydrodynamics interacting with topography to concentrate food resources. This study shows how incorporating oceanographic data into canyon models can broaden our understanding of processes generating faunal patterns and improve the mapping of features of conservation, supporting effective procedures for spatial ecosystem management This work was funded by the NERC MAREMAP programme, the ERC CODEMAP project (Grant no 258482), the EC FP7 IP HERMIONE, DEFRA and the NERC CLASS programme (Grant No NE/R015953/1). Tabitha Pearman is a PhD student in the NERC-funded SPITFIRE Doctoral Training Programme (Grant number NE/L002531/1). Veerle Huvenne currently receives funding from the NERC CLASS programme and from the European Union’s Horizon2020 research and innovation programme iAtlantic project (grant agreement No 818123) With the funding support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S), of the Spanish Research Agency (AEI) 17 pages, 8 figures, 4 tables, supplemental material https://doi.org/10.1016/j.pocean.2020.102338 Peer reviewed
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You have already added works in your ORCID record related to the merged Research product. - Publication . Article . 2019Open AccessAuthors:Philippa K Bird; Rosemary R. C. McEachan; Mark Mon-Williams; Neil Small; Jane West; Peter H. Whincup; John Wright; Elizabeth Andrews; Sally E. Barber; Liam J. B. Hill; +7 morePhilippa K Bird; Rosemary R. C. McEachan; Mark Mon-Williams; Neil Small; Jane West; Peter H. Whincup; John Wright; Elizabeth Andrews; Sally E. Barber; Liam J. B. Hill; Laura Lennon; Dan Mason; Katy A. Shire; Dagmar Waiblinger; Amanda H. Waterman; Debbie A Lawlor; Kate E. Pickett;
pmc: PMC6626420
pmid: 313
Publisher: Springer Science and Business Media LLCCountry: United KingdomProject: WT | The Born in Bradford (BiB... (101597), EC | ObesityDevelop (669545), UKRI | Reproductive and cardio-m... (MC_UU_00011/6), UKRI | Centre for molecular-base... (G0600705), UKRI | Born in Bradford 2nd Wave (MR/N024397/1)Background Born in Bradford (BiB) is a prospective multi-ethnic pregnancy and birth cohort study that was established to examine determinants of health and development during childhood and, subsequently, adult life in a deprived multi-ethnic population in the north of England. Between 2007 and 2010, the BiB cohort recruited 12,453 women who experienced 13,776 pregnancies and 13,858 births, along with 3353 of their partners. Forty five percent of the cohort are of Pakistani origin. Now that children are at primary school, the first full follow-up of the cohort is taking place. The aims of the follow-up are to investigate the determinants of children’s pre-pubertal health and development, including through understanding parents’ health and wellbeing, and to obtain data on exposures in childhood that might influence future health. Methods We are employing a multi-method approach across three data collection arms (community-based family visits, school based physical assessment, and whole classroom cognitive, motor function and wellbeing measures) to follow-up over 9000 BiB children aged 7–11 years and their families between 2017 and 2021. We are collecting detailed parent and child questionnaires, cognitive and sensorimotor assessments, blood pressure, anthropometry and blood samples from parents and children. Dual x-ray absorptiometry body scans, accelerometry and urine samples are collected on subsamples. Informed consent is collected for continued routine data linkage to health, social care and education records. A range of engagement activities are being used to raise the profile of BiB and to disseminate findings. Discussion Our multi-method approach to recruitment and assessment provides an efficient method of collecting rich data on all family members. Data collected will enhance BiB as a resource for the international research community to study the interplay between ethnicity, socioeconomic circumstances and biology in relation to cardiometabolic health, mental health, education, cognitive and sensorimotor development and wellbeing. Electronic supplementary material The online version of this article (10.1186/s12889-019-7222-2) contains supplementary material, which is available to authorized users.
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You have already added works in your ORCID record related to the merged Research product. - Publication . Article . 2018Open AccessAuthors:Fergal Byrne; Bart Forier; Greet Bossaert; Charly Hoebers; Thomas J. Farmer; Andrew J. Hunt;Fergal Byrne; Bart Forier; Greet Bossaert; Charly Hoebers; Thomas J. Farmer; Andrew J. Hunt;
doi: 10.1039/c8gc01132j
Publisher: Royal Society of Chemistry (RSC)Project: EC | ReSolve (745450)A “top down” approach to the development of sustainable, greener, low-polarity solvents is presented. Methyl butyrate, ethyl isobutyrate, methyl pivalate and pinacolone were identified as potential target sol- vents from trends in Hansen solubility parameters and known physical properties. Solubility, flammability and physical properties were determined which showed their potential to replace traditional, hazardous, volatile, non-polar solvents such as toluene. Each new candidate then demonstrated their suitability to replace these traditional solvents in solubility tests, despite being esters and ketones, each candidate demonstrated their similarity to traditional volatile non-polar solvents in terms of their solubility properties by their ability to dissolve natural rubber, a particularly low-polarity solute. This was reinforced by their performance in a model Menschutkin reaction and a radical-initiated polymerisation for the production of pressure-sensitive adhesives, where their performance was found to be similar to that of toluene. Importantly, a preliminary toxicity test (Ames test) suggested non-mutagenicity in all candidates. Each of the four candidates can be synthesised via a catalytic route from potentially renewable resources, thus enhancing their green credentials.
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You have already added works in your ORCID record related to the merged Research product. - Publication . Article . Other literature type . 2021Open AccessAuthors:Adam Brunke; Mikko Pentinsaari; Jan Klimaszewski;Adam Brunke; Mikko Pentinsaari; Jan Klimaszewski;Publisher: Pensoft Publishers
A long tradition of separate Nearctic and Palaearctic taxonomic studies of the diverse aleocharine rove beetles (Coleoptera: Staphylinidae) has obscured the recognition of Holarctic species and detection of adventive species in both regions. Recently, integrated study of the two regions through detailed morphological comparisons and development of an authoritatively identified DNA barcode reference library has revealed the degree to which these two aleocharine faunas are interconnected, both naturally and through human activity. Here this approach is adopted to recognize new species, reveal Holarctic species, and recognize adventive species in both North America and Europe. The following new species are described: Isoglossa triangularis Klimaszewski, Brunke & Pentinsaari, sp. nov. from British Columbia; Gnypeta impressicollis Klimaszewski, Brunke & Pentinsaari, sp. nov., from Ontario, Maryland and North Carolina; Aloconota pseudogregaria Klimaszewski, Brunke & Pentinsaari, sp. nov., from Ontario and Virginia; and Philhygra pseudolaevicollis Klimaszewski, Brunke & Pentinsaari, sp. nov. from eastern Canada. Dasygnypeta velata and Philhygra angusticauda are revealed to be Holarctic species, resulting in the following synonymies: Dasygnypeta velata (Erichson, 1839) = Gnypeta minuta Klimaszewski & Webster, 2008, syn. nov. and Philhygra angusticauda (Bernhauer, 1909) = Atheta (Philhygra) pinegensis Muona, 1983, syn. nov. The Nearctic species Hylota ochracea (and genus Hylota), Thecturota tenuissima, and Trichiusa robustula are newly reported from the Palaearctic region as adventive, resulting in the following synonymies: Hylota ochracea Casey, 1906 = Stichoglossa (Dexiogyia) forticornis Strand, 1939, syn. nov.; Thecturota tenuissima Casey, 1893 = Atheta marchii Dodero, 1922, syn. nov.; and Trichiusa robustula Casey, 1893 = T. immigrata Lohse, 1984, syn. nov. The Palaearctic species Amarochara forticornis, Anomognathus cuspidatus, Oligota pumilio, and Parocyusa rubicunda are newly confirmed from the Nearctic region as adventive, resulting in the following synonymies: Parocyusa rubicunda (Erichson, 1837) = Chilopora americana Casey, 1906, syn. nov. and Anomognathus cuspidatus (Erichson, 1839) = Thectura americana Casey, 1893, syn. nov. The genus Dasygnypeta, sensu nov. is newly reported from North America, Paradilacra is newly reported from eastern North America, and Haploglossa is newly reported from Canada, resulting in the following synonymy: Paradilacra densissima (Bernhauer, 1909) = Gnypeta saccharina Klimaszewski & Webster, 2008, syn. nov. Native Cyphea wallisi is newly reported from across Canada and C. curtula is removed from the Nearctic fauna. The status of both Gyrophaena affinis and Homalota plana is uncertain but these species are no longer considered to be adventive in North America. Three new combinations are proposed: Dasygnypeta baranowskii (Klimaszewski, 2020) and D. nigrella (LeConte, 1863) (both from Gnypeta) and Mocyta scopula (Casey, 1893) (from Acrotona). Dolosota Casey, 1910, syn. nov. (type species Eurypronota scopula Casey), currently a subgenus of Acrotona, is therefore synonymized with Mocyta Mulsant & Rey, 1874. Additionally, four new Canadian records and 18 new provincial and state records are reported.
Top 10% in popularityTop 10% in popularityAverage/low influencePopularity: Citation-based measure reflecting the current impact.Average/low influenceInfluence: Citation-based measure reflecting the total impact.add Add to ORCIDPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product. - Publication . Article . 2016Open AccessAuthors:Marta Valencia; Helge Müller-Bunz; Robert A. Gossage; Martin Albrecht;Marta Valencia; Helge Müller-Bunz; Robert A. Gossage; Martin Albrecht;
doi: 10.1039/c6cc00267f
pmid: 2682291
Publisher: Royal Society of Chemistry (RSC)Country: SwitzerlandProject: EC | CoopClickCat (660929), EC | SYNMICS (615653)A bimetallic [Ir3+]2 complex was synthesized based on a bridging 1,2,3-triazole ligand that coordinates to one Cp*Ir unit as N,Nbidentate chelate, and to the other as a C,C-bidentate ligand. When compared to monometallic homologues, the bimetallic complex shows greatly enhanced product selectivity for the acceptorless dehydrogenation of alcohols; spectroscopic and electrochemical analysis suggest significant alteration of the metal properties in the bimetallic system compared to the monometallic species, which offers a rationale for the observed high selectivity.
Top 10% in popularityTop 10% in popularityTop 10% in influencePopularity: Citation-based measure reflecting the current impact.Top 10% in influenceInfluence: Citation-based measure reflecting the total impact.add Add to ORCIDPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product. - Publication . Other literature type . Article . 2021Open AccessAuthors:David A. Sleet; Louis Hugo Francescutti;David A. Sleet; Louis Hugo Francescutti;Publisher: MDPI AG
On any given night, hundreds of thousands of people are homeless in the United States and Canada [...]
Top 10% in popularityTop 10% in popularityAverage/low influencePopularity: Citation-based measure reflecting the current impact.Average/low influenceInfluence: Citation-based measure reflecting the total impact.add Add to ORCIDPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.
425 Research products, page 1 of 43
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- Publication . Article . Other literature type . 2020Open AccessAuthors:Maxime Lobry; Médéric Loyez; Karima Chah; Eman M. Hassan; Erik Goormaghtigh; Maria C. DeRosa; Ruddy Wattiez; Christophe Caucheteur;Maxime Lobry; Médéric Loyez; Karima Chah; Eman M. Hassan; Erik Goormaghtigh; Maria C. DeRosa; Ruddy Wattiez; Christophe Caucheteur;Publisher: Optica Publishing GroupCountries: Belgium, Canada
In the biomedical detection context, plasmonic tilted fiber Bragg gratings (TFBGs) have been demonstrated to be a very accurate and sensitive sensing tool, especially well-adapted for biochemical detection. In this work, we have developed an aptasensor following a triple strategy to improve the overall sensing performances and robustness. Single polarization fiber (SPF) is used as biosensor substrate while the demodulation is based on tracking a peculiar feature of the lower envelope of the cladding mode resonances spectrum. This method is highly sensitive and yields wavelength shifts several tens of times higher than the ones reported so far based on the tracking of individual modes of the spectrum. An amplification of the response is further performed through a sandwich assay by the use of specific antibodies. These improvements have been achieved on a biosensor developed for the detection of the HER2 (Human Epidermal Growth Factor Receptor-2) protein, a relevant breast cancer biomarker. These advanced developments can be very interesting for point-of-care biomedical measurements in a convenient practical way.
Top 1% in popularityTop 1% in popularityTop 10% in influencePopularity: Citation-based measure reflecting the current impact.Top 10% in influenceInfluence: Citation-based measure reflecting the total impact.add Add to ORCIDPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product. - Publication . Article . Other literature type . 2021Open AccessAuthors:H.E. James Hammond; Sergio García-Tejero; Greg R. Pohl; David W. Langor; John R. Spence;H.E. James Hammond; Sergio García-Tejero; Greg R. Pohl; David W. Langor; John R. Spence;Publisher: Pensoft Publishers
Epigaeic beetle assemblages were surveyed using continuous pitfall trapping during the summers of 1992 and 1993 in six widely geographically distributed locations in Alberta’s aspen-mixedwood forests prior to initial forest harvest. Species composition and turnover (β-diversity) were evaluated on several spatial scales ranging from Natural Regions (distance between samples 120–420 km) to pitfall traps (40–60 m). A total of 19,885 ground beetles (Carabidae) representing 40 species and 12,669 rove beetles (non-AleocharinaeStaphylinidae) representing 78 species was collected. Beetle catch, species richness, and diversity differed significantly among the six locations, as did the identity of dominant species. Beetle species composition differed significantly between the Boreal Forest and Foothills Natural Regions for both taxa. Staphylinidae β-diversity differed significantly between Natural Regions, whereas Carabidae β-diversity differed among locations. Climate variables such as number of frost-free days, dry periods, and mean summer temperatures were identified as significant factors influencing beetle assemblages at coarse spatial scales, whereas over- and understory vegetation cover, litter depth, shade, slope, and stand age influenced beetle assemblages at finer spatial scales. Significant interannual variation in assemblage structure was noted for both taxa. Because composition of epigaeic beetle assemblages differed across spatial scales, forest management strategies based only on generalized understanding of a single location will be ineffective as conservation measures. In addition, site history and geographic variation significantly affect species distributions of these two beetle families across the landscape. Thus, we underscore Terry Erwin’s suggestion that biodiversity assessments focused on species assemblages at different spatial scales provide a sound approach for understanding biodiversity change and enhancing conservation of arthropod biodiversity.
Top 10% in popularityTop 10% in popularityAverage/low influencePopularity: Citation-based measure reflecting the current impact.Average/low influenceInfluence: Citation-based measure reflecting the total impact.add Add to ORCIDPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product. - Publication . Other literature type . 2014Open Access EnglishAuthors:Stein, Claire Simpson; Aaron Goldenberg; Rob Culverhouse; Denise Daley; Robert Igo; Gail Jarvik; Diptasri Mandal; Deborah Mascalzoni; Courtney Montgomery; Brandon Pierce; Rosemarie Plaetke; Sanjay Shete; Katrina Goddard; Catherine;Stein, Claire Simpson; Aaron Goldenberg; Rob Culverhouse; Denise Daley; Robert Igo; Gail Jarvik; Diptasri Mandal; Deborah Mascalzoni; Courtney Montgomery; Brandon Pierce; Rosemarie Plaetke; Sanjay Shete; Katrina Goddard; Catherine;Publisher: Multidisciplinary Digital Publishing Institute
The underlying ethos of dbGaP is that access to these data by secondary data analysts facilitates advancement of science. NIH has required that genome-wide association study data be deposited in the Database of Genotypes and Phenotypes (dbGaP) since 2003. In 2013, a proposed updated policy extended this requirement to next-generation sequencing data. However, recent literature and anecdotal reports suggest lingering logistical and ethical concerns about subject identifiability, informed consent, publication embargo enforcement, and difficulty in accessing dbGaP data. We surveyed the International Genetic Epidemiology Society (IGES) membership about their experiences. One hundred and seventy five (175) individuals completed the survey, a response rate of 27%. Of respondents who received data from dbGaP (43%), only 32% perceived the application process as easy but most (75%) received data within five months. Remaining challenges include difficulty in identifying an institutional signing official and an overlong application process. Only 24% of respondents had contributed data to dbGaP. Of these, 31% reported local IRB restrictions on data release; an additional 15% had to reconsent study participants before depositing data. The majority of respondents (56%) disagreed that the publication embargo period was sufficient. In response, we recommend longer embargo periods and use of varied data-sharing models rather than a one-size-fits-all approach.
Average/low popularityAverage/low popularityAverage/low influencePopularity: Citation-based measure reflecting the current impact.Average/low influenceInfluence: Citation-based measure reflecting the total impact. - Publication . Other literature type . 2014Open Access EnglishAuthors:Waldner, Lianne McLeod; Lalita Bharadwaj; Cheryl;Waldner, Lianne McLeod; Lalita Bharadwaj; Cheryl;Publisher: Multidisciplinary Digital Publishing Institute
A cross-sectional study investigated risk factors associated with choices to drink bottled water and tap water in rural Saskatchewan. Of 7,500 anonymous postal questionnaires mailed out, 2,065 responses were analyzed using generalized linear mixed models. Those who reported a water advisory (p < 0.001) or living in the area for £10 years (p = 0.01) were more likely to choose bottled water. Those who reported tap water was not safe to drink were more likely to choose bottled water, an effect greater for those who had no aesthetic complaints (p ≤ 0.001), while those with aesthetic complaints were more likely to choose bottled water if they believed the water was safe (p < 0.001). Respondents who treated their water and did not use a community supply were more likely to choose bottled water (p < 0.001), while those who did not treat their water were more likely to choose bottled water regardless of whether a community supply was used (p < 0.001). A similar pattern of risk factors was associated with a decreased likelihood of consuming tap water daily; however, the use of a community water supply was not significant. Understanding the factors involved in drinking water choices could inform public health education efforts regarding water management in rural areas.
Average/low popularityAverage/low popularityAverage/low influencePopularity: Citation-based measure reflecting the current impact.Average/low influenceInfluence: Citation-based measure reflecting the total impact. - Publication . Article . 2020Open AccessAuthors:T.R.R. Pearman; Katleen Robert; Alexander Callaway; Robert Hall; C. Lo Iacono; Veerle A.I. Huvenne;T.R.R. Pearman; Katleen Robert; Alexander Callaway; Robert Hall; C. Lo Iacono; Veerle A.I. Huvenne;
handle: 10261/216488
Publisher: Elsevier BVCountries: United Kingdom, SpainProject: UKRI | SPITFIRE - the Southampto... (NE/L002531/1), EC | HABISS (890815), EC | iAtlantic (818123), EC | CODEMAP (258482)Submarine canyons are associated with increased biodiversity, including cold-water coral (CWC) colonies and reefs which are features of high conservation value that are under increasing anthropogenic pressure. Effective spatial management and conservation of these features requires accurate distribution maps and a deeper understanding of the processes that generate the observed distribution patterns. Predictive distribution modelling offers a powerful tool in the deep sea, where surveys are constrained by cost and technological capabilities. To date, predictive distribution modelling in canyons has focussed on integrating groundtruthed acoustically acquired datasets as proxies for environmental variables thought to influence faunal patterns. Physical oceanography is known to influence faunal patterns but has rarely been explicitly included in predictive distribution models of canyon fauna, thereby omitting key information required to adequately capture the species-environment relationships that form the basis of predictive distribution modelling. In this study, acoustic, oceanographic and biological datasets were integrated to undertake high-resolution predictions of benthic megafaunal diversity and CWC distribution within Whittard Canyon, North-East Atlantic. The main aim was to investigate which environmental variables best predict faunal patterns in canyons and to assess whether including oceanographic data improves predictive modelling. General additive models, random forests and boosted regression trees were used to build predictive maps for CWC occurrence, megafaunal abundance, species richness and biodiversity. To provide more robust predictions, ensemble techniques that summarise the variation in predictions and uncertainties between modelling approaches were applied to build final maps. Model performance improved with the inclusion of oceanographic data. Ensemble maps identified areas of elevated current speed that coincided with steep ridges and escarpment walls as the areas most likely to harbour CWCs and increased biodiversity, probably linked to local hydrodynamics interacting with topography to concentrate food resources. This study shows how incorporating oceanographic data into canyon models can broaden our understanding of processes generating faunal patterns and improve the mapping of features of conservation, supporting effective procedures for spatial ecosystem management This work was funded by the NERC MAREMAP programme, the ERC CODEMAP project (Grant no 258482), the EC FP7 IP HERMIONE, DEFRA and the NERC CLASS programme (Grant No NE/R015953/1). Tabitha Pearman is a PhD student in the NERC-funded SPITFIRE Doctoral Training Programme (Grant number NE/L002531/1). Veerle Huvenne currently receives funding from the NERC CLASS programme and from the European Union’s Horizon2020 research and innovation programme iAtlantic project (grant agreement No 818123) With the funding support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S), of the Spanish Research Agency (AEI) 17 pages, 8 figures, 4 tables, supplemental material https://doi.org/10.1016/j.pocean.2020.102338 Peer reviewed
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You have already added works in your ORCID record related to the merged Research product. - Publication . Article . 2019Open AccessAuthors:Philippa K Bird; Rosemary R. C. McEachan; Mark Mon-Williams; Neil Small; Jane West; Peter H. Whincup; John Wright; Elizabeth Andrews; Sally E. Barber; Liam J. B. Hill; +7 morePhilippa K Bird; Rosemary R. C. McEachan; Mark Mon-Williams; Neil Small; Jane West; Peter H. Whincup; John Wright; Elizabeth Andrews; Sally E. Barber; Liam J. B. Hill; Laura Lennon; Dan Mason; Katy A. Shire; Dagmar Waiblinger; Amanda H. Waterman; Debbie A Lawlor; Kate E. Pickett;
pmc: PMC6626420
pmid: 313
Publisher: Springer Science and Business Media LLCCountry: United KingdomProject: WT | The Born in Bradford (BiB... (101597), EC | ObesityDevelop (669545), UKRI | Reproductive and cardio-m... (MC_UU_00011/6), UKRI | Centre for molecular-base... (G0600705), UKRI | Born in Bradford 2nd Wave (MR/N024397/1)Background Born in Bradford (BiB) is a prospective multi-ethnic pregnancy and birth cohort study that was established to examine determinants of health and development during childhood and, subsequently, adult life in a deprived multi-ethnic population in the north of England. Between 2007 and 2010, the BiB cohort recruited 12,453 women who experienced 13,776 pregnancies and 13,858 births, along with 3353 of their partners. Forty five percent of the cohort are of Pakistani origin. Now that children are at primary school, the first full follow-up of the cohort is taking place. The aims of the follow-up are to investigate the determinants of children’s pre-pubertal health and development, including through understanding parents’ health and wellbeing, and to obtain data on exposures in childhood that might influence future health. Methods We are employing a multi-method approach across three data collection arms (community-based family visits, school based physical assessment, and whole classroom cognitive, motor function and wellbeing measures) to follow-up over 9000 BiB children aged 7–11 years and their families between 2017 and 2021. We are collecting detailed parent and child questionnaires, cognitive and sensorimotor assessments, blood pressure, anthropometry and blood samples from parents and children. Dual x-ray absorptiometry body scans, accelerometry and urine samples are collected on subsamples. Informed consent is collected for continued routine data linkage to health, social care and education records. A range of engagement activities are being used to raise the profile of BiB and to disseminate findings. Discussion Our multi-method approach to recruitment and assessment provides an efficient method of collecting rich data on all family members. Data collected will enhance BiB as a resource for the international research community to study the interplay between ethnicity, socioeconomic circumstances and biology in relation to cardiometabolic health, mental health, education, cognitive and sensorimotor development and wellbeing. Electronic supplementary material The online version of this article (10.1186/s12889-019-7222-2) contains supplementary material, which is available to authorized users.
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You have already added works in your ORCID record related to the merged Research product. - Publication . Article . 2018Open AccessAuthors:Fergal Byrne; Bart Forier; Greet Bossaert; Charly Hoebers; Thomas J. Farmer; Andrew J. Hunt;Fergal Byrne; Bart Forier; Greet Bossaert; Charly Hoebers; Thomas J. Farmer; Andrew J. Hunt;
doi: 10.1039/c8gc01132j
Publisher: Royal Society of Chemistry (RSC)Project: EC | ReSolve (745450)A “top down” approach to the development of sustainable, greener, low-polarity solvents is presented. Methyl butyrate, ethyl isobutyrate, methyl pivalate and pinacolone were identified as potential target sol- vents from trends in Hansen solubility parameters and known physical properties. Solubility, flammability and physical properties were determined which showed their potential to replace traditional, hazardous, volatile, non-polar solvents such as toluene. Each new candidate then demonstrated their suitability to replace these traditional solvents in solubility tests, despite being esters and ketones, each candidate demonstrated their similarity to traditional volatile non-polar solvents in terms of their solubility properties by their ability to dissolve natural rubber, a particularly low-polarity solute. This was reinforced by their performance in a model Menschutkin reaction and a radical-initiated polymerisation for the production of pressure-sensitive adhesives, where their performance was found to be similar to that of toluene. Importantly, a preliminary toxicity test (Ames test) suggested non-mutagenicity in all candidates. Each of the four candidates can be synthesised via a catalytic route from potentially renewable resources, thus enhancing their green credentials.
Top 10% in popularityTop 10% in popularityAverage/low influencePopularity: Citation-based measure reflecting the current impact.Average/low influenceInfluence: Citation-based measure reflecting the total impact.add Add to ORCIDPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product. - Publication . Article . Other literature type . 2021Open AccessAuthors:Adam Brunke; Mikko Pentinsaari; Jan Klimaszewski;Adam Brunke; Mikko Pentinsaari; Jan Klimaszewski;Publisher: Pensoft Publishers
A long tradition of separate Nearctic and Palaearctic taxonomic studies of the diverse aleocharine rove beetles (Coleoptera: Staphylinidae) has obscured the recognition of Holarctic species and detection of adventive species in both regions. Recently, integrated study of the two regions through detailed morphological comparisons and development of an authoritatively identified DNA barcode reference library has revealed the degree to which these two aleocharine faunas are interconnected, both naturally and through human activity. Here this approach is adopted to recognize new species, reveal Holarctic species, and recognize adventive species in both North America and Europe. The following new species are described: Isoglossa triangularis Klimaszewski, Brunke & Pentinsaari, sp. nov. from British Columbia; Gnypeta impressicollis Klimaszewski, Brunke & Pentinsaari, sp. nov., from Ontario, Maryland and North Carolina; Aloconota pseudogregaria Klimaszewski, Brunke & Pentinsaari, sp. nov., from Ontario and Virginia; and Philhygra pseudolaevicollis Klimaszewski, Brunke & Pentinsaari, sp. nov. from eastern Canada. Dasygnypeta velata and Philhygra angusticauda are revealed to be Holarctic species, resulting in the following synonymies: Dasygnypeta velata (Erichson, 1839) = Gnypeta minuta Klimaszewski & Webster, 2008, syn. nov. and Philhygra angusticauda (Bernhauer, 1909) = Atheta (Philhygra) pinegensis Muona, 1983, syn. nov. The Nearctic species Hylota ochracea (and genus Hylota), Thecturota tenuissima, and Trichiusa robustula are newly reported from the Palaearctic region as adventive, resulting in the following synonymies: Hylota ochracea Casey, 1906 = Stichoglossa (Dexiogyia) forticornis Strand, 1939, syn. nov.; Thecturota tenuissima Casey, 1893 = Atheta marchii Dodero, 1922, syn. nov.; and Trichiusa robustula Casey, 1893 = T. immigrata Lohse, 1984, syn. nov. The Palaearctic species Amarochara forticornis, Anomognathus cuspidatus, Oligota pumilio, and Parocyusa rubicunda are newly confirmed from the Nearctic region as adventive, resulting in the following synonymies: Parocyusa rubicunda (Erichson, 1837) = Chilopora americana Casey, 1906, syn. nov. and Anomognathus cuspidatus (Erichson, 1839) = Thectura americana Casey, 1893, syn. nov. The genus Dasygnypeta, sensu nov. is newly reported from North America, Paradilacra is newly reported from eastern North America, and Haploglossa is newly reported from Canada, resulting in the following synonymy: Paradilacra densissima (Bernhauer, 1909) = Gnypeta saccharina Klimaszewski & Webster, 2008, syn. nov. Native Cyphea wallisi is newly reported from across Canada and C. curtula is removed from the Nearctic fauna. The status of both Gyrophaena affinis and Homalota plana is uncertain but these species are no longer considered to be adventive in North America. Three new combinations are proposed: Dasygnypeta baranowskii (Klimaszewski, 2020) and D. nigrella (LeConte, 1863) (both from Gnypeta) and Mocyta scopula (Casey, 1893) (from Acrotona). Dolosota Casey, 1910, syn. nov. (type species Eurypronota scopula Casey), currently a subgenus of Acrotona, is therefore synonymized with Mocyta Mulsant & Rey, 1874. Additionally, four new Canadian records and 18 new provincial and state records are reported.
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You have already added works in your ORCID record related to the merged Research product. - Publication . Article . 2016Open AccessAuthors:Marta Valencia; Helge Müller-Bunz; Robert A. Gossage; Martin Albrecht;Marta Valencia; Helge Müller-Bunz; Robert A. Gossage; Martin Albrecht;
doi: 10.1039/c6cc00267f
pmid: 2682291
Publisher: Royal Society of Chemistry (RSC)Country: SwitzerlandProject: EC | CoopClickCat (660929), EC | SYNMICS (615653)A bimetallic [Ir3+]2 complex was synthesized based on a bridging 1,2,3-triazole ligand that coordinates to one Cp*Ir unit as N,Nbidentate chelate, and to the other as a C,C-bidentate ligand. When compared to monometallic homologues, the bimetallic complex shows greatly enhanced product selectivity for the acceptorless dehydrogenation of alcohols; spectroscopic and electrochemical analysis suggest significant alteration of the metal properties in the bimetallic system compared to the monometallic species, which offers a rationale for the observed high selectivity.
Top 10% in popularityTop 10% in popularityTop 10% in influencePopularity: Citation-based measure reflecting the current impact.Top 10% in influenceInfluence: Citation-based measure reflecting the total impact.add Add to ORCIDPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product. - Publication . Other literature type . Article . 2021Open AccessAuthors:David A. Sleet; Louis Hugo Francescutti;David A. Sleet; Louis Hugo Francescutti;Publisher: MDPI AG
On any given night, hundreds of thousands of people are homeless in the United States and Canada [...]
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You have already added works in your ORCID record related to the merged Research product.