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  • Authors: 
    J. K. Mortensen; Dave Craw; Doug MacKenzie; Janet Gabites;
    Publisher: Informa UK Limited

    Abstract Lead isotopic compositions were determined for sulphides from Pliocene-Pleistocene gold-bearing veins in the Alpine Schist and from Miocene gold-bearing veins and vein breccias from the Shotover-Macetown area in the northwest Otago Schist belt. The lead isotopic signatures are consistent with derivation of Pb in the vein minerals predominantly from metasedimentary rocks that underlie the region. Differences in Pb isotopic signatures between deposits are interpreted to result from lateral and vertical lithological variability within the source rock mass. The host rocks also contain metabasic rocks with N-MORB, E-MORB or within-plate basalt chemistry. However, the observed Pb isotopic signatures in the gold-bearing veins preclude incorporation of significant amounts of Pb from the metabasites. The Pb isotopic signatures of lamprophyre dikes that were intruded into the Otago Schist coeval with Miocene gold mineralisation are distinctly more radiogenic than those of the hydrothermal veins. Thus, alth...

  • Open Access
    Authors: 
    Bart Dils; M. De Mazière; J.-F. Müller; T. Blumenstock; Michael Buchwitz; R. de Beek; P. Demoulin; Pierre Duchatelet; H. Fast; Christian Frankenberg; +24 more
    Publisher: Copernicus GmbH

    Abstract. Total column amounts of CO, CH4, CO2 and N2O retrieved from SCIAMACHY nadir observations in its near-infrared channels have been compared to data from a ground-based quasi-global network of Fourier-transform infrared (FTIR) spectrometers. The SCIAMACHY data considered here have been produced by three different retrieval algorithms, WFM-DOAS (version 0.5 for CO and CH4 and version 0.4 for CO2 and N2O), IMAP-DOAS (version 1.1 and 0.9 (for CO)) and IMLM (version 6.3) and cover the January to December 2003 time period. Comparisons have been made for individual data, as well as for monthly averages. To maximize the number of reliable coincidences that satisfy the temporal and spatial collocation criteria, the SCIAMACHY data have been compared with a temporal 3rd order polynomial interpolation of the ground-based data. Particular attention has been given to the question whether SCIAMACHY observes correctly the seasonal and latitudinal variability of the target species. The present results indicate that the individual SCIAMACHY data obtained with the actual versions of the algorithms have been significantly improved, but that the quality requirements, for estimating emissions on regional scales, are not yet met. Nevertheless, possible directions for further algorithm upgrades have been identified which should result in more reliable data products in a near future.

  • Publication . Article . Preprint . 2018
    Open Access English
    Authors: 
    Lu, Xuan; Cao, Yanbin; Chen, Zhenpeng; Liu, Xuanzhe;

    Emoji is becoming a ubiquitous language and gaining worldwide popularity in recent years including the field of software engineering (SE). As nonverbal cues, emojis are widely used in user understanding tasks such as sentiment analysis, but few work has been done to study emojis in SE scenarios. This paper presents a large scale empirical study on how GitHub users use emojis in development-related communications. We find that emojis are used by a considerable proportion of GitHub users. In comparison to Internet users, developers show interesting usage characteristics and have their own interpretation of the meanings of emojis. In addition, the usage of emojis reflects a positive and supportive culture of this community. Through a manual annotation task, we find that sentimental usage is a main intention of using emojis in issues, pull requests, and comments, while emojis are mainly used to emphasize important contents in README. These findings not only deepen our understanding about the culture of SE communities, but also provide implications on how to facilitate SE tasks with emojis such as sentiment analysis.

  • Open Access
    Authors: 
    Ahmad Fauzi Ismail; Mahesh Padaki; Nidal Hilal; Takeshi Matsuura; Woei Jye Lau;
    Publisher: Elsevier BV
    Country: United Kingdom

    This paper provides a review on the recent development of thin film composite (TFC) membrane, which has received increasing attention in the field of water desalination process. The development of new thin films and substrates, and the effect of additives are mostly focused in this review. In particular, nanotechnology has shown its impact on the development of TFC membranes by incorporating nanoparticles and nanofibers in the substrate as well as in the top thin film. The search for novel monomers and novel fabrication methods of thin film, modification of substrate, and optimization of operational conditions is also the topic of this review article. It still remains a challenge to produce high impact TFC membranes with antifouling and biofouling properties, chemical resistance, improved mechanical strength and thermal stability. For this purpose, further insights into the phase inversion and interfacial polymerization processes are necessary. Currently, it seems that there is no end in the near future for the further development of TFC membranes, which will be followed by the expansion of the scope of their applications in various chemical and biochemical industrial sectors.

  • Open Access
    Authors: 
    Teresa M. Petrella; Ian Quirt; Sunil Verma; A E Haynes; Manya Charette; Kate Bak;
    Publisher: MDPI AG

    or to placebo in the treatment of metastatic melanoma. After reviewing and weighing the evidence that does exist, the opinion of the Melanoma dsg is that high-dose il-2 is a reasonable treatment option for a select group of patients with metastatic melanoma: In this select group of patients, il-2 treatment can produce durable complete remissions. High-dose il-2 is recommended to be given at 600,000 IU/kg per dose, delivered intravenously over 15 minutes, every 8 hours, for a maximum of 14 doses. High-dose il-2 delivery is recommended to be done in a tertiary-care facility by staff trained in the provision of this treatment and with appropriate monitoring. To facilitate treatment and to develop expertise in this therapeutic modality, the dsg recommends that high-dose il-2 programs be established in one or two centres in Ontario. High-dose il-2 has response rates that are similar to those seen with standard chemotherapy. However, unlike chemotherapy, il-2 demonstrates low but durable complete response rates that may lead to years of benefit for patients with metastatic melanoma. Based on the available data assessing prognostic factors and patient selection, patients with non-visceral metastases and fewer metastatic sites have a much higher response rate. In these select patients, high dose il-2 may be considered for first-line therapy. The lack of large randomized trials comparing il-2 to dtic or other chemotherapy means that recommendations for this guideline are based largely on phase ii data and limited phase iii data. Further randomized data will not soon become available, because no randomized trials are currently ongoing or planned. Interleukin-2 is currently widely used in the United States, and it is an approved therapy in both Canada and the United States. What is the role of single-agent interleukin-2 (il-2) in the treatment of adults with metastatic melanoma? If there is a role for single-agent il-2, what patient population can appropriately be considered for treatment? If there is a role for single-agent il-2, what dose and schedule are appropriate? What are the toxicities associated with il-2? Many agents have been investigated for antitumour activity in melanoma, but few have shown promising response rates. Early detection, appropriate surgery, and adjuvant therapy have all improved outcomes, but approximately one third of patients with early-stage disease will nevertheless develop metastases. Single-agent il-2 has attracted much attention over the past several years. A number of randomized trials and many phase ii trials investigating single-agent il-2 suggest that this systemic treatment produces durable responses in melanoma patients. Given the dismal survival of patients with meta-static melanoma and the limited availability of effective treatments, the Melanoma Disease Site Group (dsg) of Cancer Care Ontario&rsquo s Program in Evidence-Based Care (pebc) felt that the durable responses seen with il-2 treatment warranted closer examination. Primary outcomes of interest included objective response rate, complete response rate, duration of response, toxicity, and quality of life. Secondary outcomes of interest included progression-free survival and overall survival. A systematic review was developed, and clinical recommendations relevant to patients in Ontario were drafted. The practice guideline report was reviewed and approved by the Melanoma dsg, which comprises medical oncologists, surgeons, and dermatologists. External review by Ontario practitioners was obtained through a mailed survey, the results of which were incorporated into the practice guideline. Final review and approval of the practice guideline was obtained from the pebc&rsquo s Report Approval Panel. The present practice guideline reflects the integration of the draft recommendations based on a systematic review of the available evidence with the feedback obtained from external review by practitioners and the Report Approval Panel. No studies have compared il-2 to the current standard of care&mdash dacarbazine (dtic)&mdash

  • Open Access
    Authors: 
    Elizabeth Bancroft; Elizabeth Page; Elena Castro; Hans Lilja; Andrew J. Vickers; Daniel Sjöberg; Melissa Assel; Christopher S. Foster; Gillian Mitchell; Kate Drew; +105 more
    Publisher: Elsevier BV
    Countries: Denmark, United Kingdom, Netherlands
    Project: NIH | Improving prostate cancer... (5R01CA175491-04), NIH | Prospective validation of... (5R01CA160816-02), NIH | RATIONAL DESIGN OF PROSTA... (5P50CA092629-10)

    Background Men with germline breast cancer 1, early onset (BRCA1) or breast cancer 2, early onset (BRCA2) gene mutations have a higher risk of developing prostate cancer (PCa) than noncarriers. IMPACT (Identification of Men with a genetic predisposition to ProstAte Cancer: Targeted screening in BRCA1/2 mutation carriers and controls) is an international consortium of 62 centres in 20 countries evaluating the use of targeted PCa screening in men with BRCA1/2 mutations. Objective To report the first year's screening results for all men at enrolment in the study. Design, setting and participants We recruited men aged 40–69 yr with germline BRCA1/2 mutations and a control group of men who have tested negative for a pathogenic BRCA1 or BRCA2 mutation known to be present in their families. All men underwent prostate-specific antigen (PSA) testing at enrolment, and those men with PSA >3 ng/ml were offered prostate biopsy. Outcome measurements and statistical analysis PSA levels, PCa incidence, and tumour characteristics were evaluated. The Fisher exact test was used to compare the number of PCa cases among groups and the differences among disease types. Results and limitations We recruited 2481 men (791 BRCA1 carriers, 531 BRCA1 controls; 731 BRCA2 carriers, 428 BRCA2 controls). A total of 199 men (8%) presented with PSA >3.0 ng/ml, 162 biopsies were performed, and 59 PCas were diagnosed (18 BRCA1 carriers, 10 BRCA1 controls; 24 BRCA2 carriers, 7 BRCA2 controls); 66% of the tumours were classified as intermediate- or high-risk disease. The positive predictive value (PPV) for biopsy using a PSA threshold of 3.0 ng/ml in BRCA2 mutation carriers was 48%—double the PPV reported in population screening studies. A significant difference in detecting intermediate- or high-risk disease was observed in BRCA2 carriers. Ninety-five percent of the men were white, thus the results cannot be generalised to all ethnic groups. Conclusions The IMPACT screening network will be useful for targeted PCa screening studies in men with germline genetic risk variants as they are discovered. These preliminary results support the use of targeted PSA screening based on BRCA genotype and show that this screening yields a high proportion of aggressive disease. Patient summary In this report, we demonstrate that germline genetic markers can be used to identify men at higher risk of prostate cancer. Targeting screening at these men resulted in the identification of tumours that were more likely to require treatment. Take Home Message This report demonstrates that germline genetic markers can be used to identify men at higher risk of prostate cancer. Targeting screening at these higher-risk men resulted in the identification of tumours that were more likely to require treatment.

  • Publication . Article . 2009
    Open Access English
    Authors: 
    Michael H. Albert; Julian West;
    Publisher: episciences.org

    Nous définissons un cycle universel pour une classe de $n$-permutations comme un mot cyclique dans lequel chaque élément de la classe apparaît une unique fois comme $n$-facteur. Nous donnons un résultat général pour les classes cycliquement closes, et détaillons la situation où la classe de permutations est définie par motifs exclus, avec des motifs de taille $3$, ou bien à la fois des motifs de taille $3$ et de taille $4$. We define a universal cycle for a class of $n$-permutations as a cyclic word in which each element of the class occurs exactly once as an $n$-factor. We give a general result for cyclically closed classes, and then survey the situation when the class is defined as the avoidance class of a set of permutations of length $3$, or of a set of permutations of mixed lengths $3$ and $4$.

  • Closed Access English
    Authors: 
    Javier Cortes; David W. Cescon; Hope S. Rugo; Zbigniew Nowecki; Seock-Ah Im; Mastura Md Yusof; Carlos Gallardo; Oleg Lipatov; Carlos H. Barrios; Esther Holgado; +190 more
    Publisher: Lancet Publishing Group
    Country: Turkey

    JC reports personal fees and research funding paid to his institution from Roche, AstraZeneca, Merck Sharp & Dohme, and Eisai; personal fees from Celgene, Cellestia, Biothera Pharmaceutical, Merus, Seattle Genetics, Daiichi Sankyo, Erytech, Athenex, Polyphor, Lilly, Servier, GlaxoSmithKline, Leuko, Bioasis, Clovis Oncology, Boehringer Ingelheim, Kyowa Kirin, Novartis, Pfizer, Samsung Bioepis; research funding paid to his institution from Ariad Pharmaceuticals, Bayer Healthcare, F Hoffman-La Roche, Guardanth Health, Piqur Therapeutics, Puma C, and Queen Mary University of London, outside the submitted work. In addition, JC has a MedSIR patent pending. DWC reports research support from Merck during the conduct of the study; research support paid to his institution from Merck, Pfizer, and GlaxoSmithKline; personal fees from Merck, Roche–Genentech, AstraZeneca, GlaxoSmithKline, Novartis, Pfizer, Puma, Agenda, Exact Sciences, and Dynamo Therapeutics, outside the submitted work. In addition, DWC has a Biomarkers of TTK inhibitors patent pending. HSR reports funding for sponsored studies paid to the University of California San Francisco from Pfizer, Novartis, Lilly, Roche–Genentech, Macrogenics, OBI, Merck, Eisai, Immunomedics, Daiichi Sankyo, Seattle Genetics, and Odonate; travel support for educational meetings from Daiichi Sankyo, Mylan, Pfizer, Merck, AstraZeneca, Novartis, and Macrogenics; and consulting fees from Samsung and Puma, outside the submitted work. S-AI reports grants from AstraZeneca, Eisai, Pfizer, Roche, and Daewoong; an advisory role for AstraZeneca, Amgen, Eisai, Hanmi, Novartis, Lily, MedPacto, Pfizer, and Roche; and travel expenses for presentation from Novartis, outside the submitted work. CG reports Advisory Board fees from Merck Sharp & Dohme and Roche; and speaker's bureau fees from Bristol Myers Squibb and AstraZeneca, outside the submitted work. CHB reports grants and fees from Merck Sharp & Dohme for clinical research consulting during the conduct of the study; consulting–advisory role fees from Boehringer Ingelheim, GlaxoSmithKline, and Bayer; consulting–advisory role fees and grants for clinical research from Novartis, Pfizer, Roche–Genentech, Eisai, Merck Sharp & Dohme, and AstraZeneca; grants for clinical research from Abbvie, Amgen, Astellas Pharma, Bristol Myers Squibb, Celgene, Covance, Lilly, Medication, Merck Serono, and PharmaMar; grants for academic research projects from CPO, Pontificia Universidade Católica do Rio Grande do Sul, Latin American Cooperative Oncology Group, Grupo Brasileiro Estudos Câncer Mama, and Instituto Nacional de Câncer-Brazil, outside the submitted work. HI reports a grant from Merck Sharp & Dohme during the conduct of the study; honoraria and consulting fees from Novartis, AstraZeneca, Pfizer, Lilly, Daiichi Sankyo, Eisai, and Chugai; and a grant from Chugai, outside the submitted work. NM reports honoraria and research funding paid to his institution from Chugai, AstraZeneca, Pfizer, Eli-Lilly, Eisai, Takeda, Kyowa-Kirin, Merck Sharp & Dohme, Novartis, and Daiichi Sankyo, outside the submitted work. EG reports non-financial support from Merck Sharp & Dohme during the conduct of the study; honoraria, consulting–advisory fees and meeting support from Novartis, Roche, Bristol Myers Squibb, and Pfizer; and honoraria from AstraZeneca and Astellas, outside the submitted work. SL reports research funding or consulting fees paid to her institution from Bristol Myers Squibb, Roche–Genentech, Puma Biotechnology, Pfizer, Seattle Genetics, Novartis, Merck Sharp & Dohme, Eli Lilly, Aduro Biotech, GI Therapeutics, AstraZeneca, and GlaxoSmithKline; and non-remunerated consultancy for Bristol Myers Squibb, Roche–Genentech, Pfizer, Seattle Genetics, Novartis, Merck Sharp & Dohme, and AstraZeneca, outside the submitted work. In addition, SL is supported by the National Breast Cancer Foundation of Australia Endowed Chair and the Breast Cancer Research Foundation, New York. ZG, JZ, GA, and VK are employees of Merck Sharp & Dohme and own stock or stock options in Merck. PS reports consultancy fees from Pfizer, AstraZeneca, Novartis, Roche, Merck Sharp & Dohme, Boehringer Ingelheim, Bayer, Eisai, Celgene, and Puma; consultancy fees to his spouse from Genentech and Roche; and grants or funding to his institution from Roche, Genentech, Oncogenex, Novartis, Astellas, and AstraZeneca, outside the submitted work. All other authors declare no competing interests. Background: Pembrolizumab monotherapy showed durable antitumour activity and manageable safety in patients with metastatic triple-negative breast cancer. We aimed to examine whether the addition of pembrolizumab would enhance the antitumour activity of chemotherapy in patients with metastatic triple-negative breast cancer. Methods: In this randomised, placebo-controlled, double-blind, phase 3 trial, done in 209 sites in 29 countries, we randomly assigned patients 2:1 with untreated locally recurrent inoperable or metastatic triple-negative breast cancer using a block method (block size of six) and an interactive voice-response system with integrated web-response to pembrolizumab (200 mg) every 3 weeks plus chemotherapy (nab-paclitaxel; paclitaxel; or gemcitabine plus carboplatin) or placebo plus chemotherapy. Randomisation was stratified by type of on-study chemotherapy (taxane or gemcitabine–carboplatin), PD-L1 expression at baseline (combined positive score [CPS] ?1 or <1), and previous treatment with the same class of chemotherapy in the neoadjuvant or adjuvant setting (yes or no). Eligibility criteria included age at least 18 years, centrally confirmed triple-negative breast cancer; at least one measurable lesion; provision of a newly obtained tumour sample for determination of triple-negative breast cancer status and PD-L1 status by immunohistochemistry at a central laboratory; an Eastern Cooperative Oncology Group performance status score 0 or 1; and adequate organ function. The sponsor, investigators, other study site staff (except for the unmasked pharmacist), and patients were masked to pembrolizumab versus saline placebo administration. In addition, the sponsor, the investigators, other study site staff, and patients were masked to patient-level tumour PD-L1 biomarker results. Dual primary efficacy endpoints were progression-free survival and overall survival assessed in the PD-L1 CPS of 10 or more, CPS of 1 or more, and intention-to-treat populations. The definitive assessment of progression-free survival was done at this interim analysis; follow-up to assess overall survival is continuing. For progression-free survival, a hierarchical testing strategy was used, such that testing was done first in patients with CPS of 10 or more (prespecified statistical criterion was ?=0·00411 at this interim analysis), then in patients with CPS of 1 or more (?=0·00111 at this interim analysis, with partial alpha from progression-free survival in patients with CPS of 10 or more passed over), and finally in the intention-to-treat population (?=0·00111 at this interim analysis). This study is registered with ClinicalTrials.gov, NCT02819518, and is ongoing. Findings: Between Jan 9, 2017, and June 12, 2018, of 1372 patients screened, 847 were randomly assigned to treatment, with 566 patients in the pembrolizumab–chemotherapy group and 281 patients in the placebo–chemotherapy group. At the second interim analysis (data cutoff, Dec 11, 2019), median follow-up was 25·9 months (IQR 22·8–29·9) in the pembrolizumab–chemotherapy group and 26·3 months (22·7–29·7) in the placebo–chemotherapy group. Among patients with CPS of 10 or more, median progression-free survival was 9·7 months with pembrolizumab–chemotherapy and 5·6 months with placebo–chemotherapy (hazard ratio [HR] for progression or death, 0·65, 95% CI 0·49–0·86; one-sided p=0·0012 [primary objective met]). Median progression-free survival was 7·6 and 5·6 months (HR, 0·74, 0·61–0·90; one-sided p=0·0014 [not significant]) among patients with CPS of 1 or more and 7·5 and 5·6 months (HR, 0·82, 0·69–0·97 [not tested]) among the intention-to-treat population. The pembrolizumab treatment effect increased with PD-L1 enrichment. Grade 3–5 treatment-related adverse event rates were 68% in the pembrolizumab–chemotherapy group and 67% in the placebo–chemotherapy group, including death in <1% in the pembrolizumab–chemotherapy group and 0% in the placebo–chemotherapy group. Interpretation: Pembrolizumab–chemotherapy showed a significant and clinically meaningful improvement in progression-free survival versus placebo–chemotherapy among patients with metastatic triple-negative breast cancer with CPS of 10 or more. These findings suggest a role for the addition of pembrolizumab to standard chemotherapy for the first-line treatment of metastatic triple-negative breast cancer. Funding: Merck Sharp & Dohme Corp, a subsidiary of Merck & Co, Inc. © 2020 Elsevier Ltd The authors thank the patients, their families and caregivers for participating in this trial, all of the investigators and site personnel, and the following employees of Merck Sharp & Dohme: Wilbur Pan, Deborah Card, Eleanor Readinger, Shana Hamm, Roger Maxwell, and Krystal Bourdon, for collection of data, supervision of research, provision of study materials or patients or administrative or logistical support; Aline Galvao, for collection of data, supervision of research, administrative or logistical support, and review of imaging data related to the primary end point; Donna Letizia, for collection of data and imaging expertise; Jennifer Kimmel, for study management; Mercedes Bustamante, for data collection and management; Xuan Zhou and Madhusudhan Reddy Papasani, for statistical expertise; Christine McCrary Sisk, for medical writing and editorial assistance; and Joseph C Naggar and Michele McColgan, for administrative or logistical support. Breast Cancer Research Foundation, BCRF; Pfizer; AstraZeneca; Merck; Roche; Samsung; Merck Sharp and Dohme, MSD; Eisai

  • Open Access English
    Authors: 
    Sahadevan Seena; Felix Bärlocher; Olímpia Sobral; Mark O. Gessner; David Dudgeon; Brendan G. McKie; Eric Chauvet; Luz Boyero; Verónica Ferreira; André Frainer; +22 more
    Publisher: Elsevier
    Countries: France, Italy, Argentina
    Project: FCT | UID/MAR/04292/2013 (UID/MAR/04292/2013), FCT | PEst-OE/BIA/UI4050/2014 (PEst-OE/BIA/UI4050/2014), FCT | PTDC/AAG-GLO/3896/2012 (PTDC/AAG-GLO/3896/2012), FCT | EXPL/AAG-GLO/0189/2013 (EXPL/AAG-GLO/0189/2013), FCT | SFRH/BPD/103865/2014 (SFRH/BPD/103865/2014)

    Global patterns of biodiversity have emerged for soil microorganisms, plants and animals, and the extraordinary significance of microbial functions in ecosystems is also well established. Virtually unknown, however, are large-scale patterns of microbial diversity in freshwaters, although these aquatic ecosystems are hotspots of biodiversity and biogeochemical processes. Here we report on the first large-scale study of biodiversity of leaf-litter fungi in streams along a latitudinal gradient unravelled by Illumina sequencing. The study is based on fungal communities colonizing standardized plant litter in 19 globally distributed stream locations between 69°N and 44°S. Fungal richness suggests a hump-shaped distribution along the latitudinal gradient. Strikingly, community composition of fungi was more clearly related to thermal preferences than to biogeography. Our results suggest that identifying differences in key environmental drivers, such as temperature, among taxa and ecosystem types is critical to unravel the global patterns of aquatic fungal diversity. Fil: Seena, Sahadevan. Universidade do Minho; Portugal. Universidad de Coimbra; Portugal Fil: Bärlocher, Felix. Mount Allison University; Canadá Fil: Sobral, Olímpia. Universidade do Minho; Portugal. Universidad de Coimbra; Portugal Fil: Gessner, Mark O.. Leibniz - Institute of Freshwater Ecology and Inland Fisheries; Alemania. Technishe Universitat Berlin; Alemania. Berlin-Brandenburgischen Instituts für Biodiversitätsforschung; Alemania Fil: Dudgeon, David. University of Hong Kong; Hong Kong Fil: McKie, Brendan. Sveriges Lantbruksuniversitet; Suecia Fil: Chauvet, Eric. Institut National des postes et télécommunications; Francia. Centre National de la Recherche Scientifique; Francia. Université Paul Sabatier; Francia Fil: Boyero, Luz. James Cook University; Australia. Universidad del País Vasco; España. Ikerbasque; España Fil: Ferreira, Verónica. Universidad de Coimbra; Portugal Fil: Frainer, André. UiT The Arctic University of Norway; Noruega Fil: Bruder, Andreas. University of Otago; Nueva Zelanda Fil: Matthaei, Christoph. University of Otago; Nueva Zelanda Fil: Fenoglio, Stefano. Università degli Studi del Piemonte Orientale Amedeo Avogadro; Italia Fil: Sridhar, Kandikere. Mangalore University; India Fil: Albariño, Ricardo Javier. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto de Investigaciones en Biodiversidad y Medioambiente. Universidad Nacional del Comahue. Centro Regional Universidad Bariloche. Instituto de Investigaciones en Biodiversidad y Medioambiente; Argentina. Universidad Nacional del Comahue. Centro Regional Universitario Bariloche. Laboratorio de Fotobiología; Argentina Fil: Douglas, Michael M.. University of Western Australia; Australia. Charles Darwin University; Australia Fil: Encalada, Andrea C.. Universidad de Coimbra; Portugal. Universidad San Francisco de Quito; Ecuador Fil: Garcia, Erica. Charles Darwin University; Australia Fil: Ghate, Sudeep. Yenepoya University. Yenepoya Research Center; India. Mangalore University; India Fil: Giling, Darren P.. Leibniz - Institute of Freshwater Ecology and Inland Fisheries; Alemania. Universitat Jena; Alemania Fil: Gonçalves, Vítor. Universidade dos Açores. Centro de Investigação em Biodiversidade e Recursos Genéticos; Portugal Fil: Iwata, Tomoya. University of Yamanashi; Japón Fil: Landeira Dabarca, Andrea. Universidad San Francisco de Quito; Ecuador Fil: McMaster, Damien. Charles Darwin University; Australia Fil: Medeiros, Adriana O.. Universidade Federal da Bahia; Brasil Fil: Naggea, Josheena. Monash University Malaysia; Malasia Fil: Pozo, Jesús. Universidad del País Vasco; España Fil: Raposeiro, Pedro. Universidade dos Açores; Portugal Fil: Swan, Christopher M.. University of Maryland; Estados Unidos Fil: Tenkiano, Nathalie S. D.. Université Julius N'yerere de Kankan; Guinea Fil: Yule, Catherine Mary. University of the Sunshine Coast; Australia. Monash University Malaysia; Malasia Fil: Graça, Manuel A. S.. Universidad de Coimbra; Portugal

  • Open Access English
    Authors: 
    James D. Kirkpatrick; Christie D. Rowe; Kohtaro Ujiie; J. Casey Moore; Christine Regalla; Francesca Remitti; Virginia Toy; M. Wolfson-Schwehr; Jun Kameda; Santanu Bose; +1 more
    Country: Italy

    The 2011 Mw9.0 Tohoku-oki earthquake ruptured to the trench with maximum coseismic slip located on the shallow portion of the plate boundary fault. To investigate the conditions and physical processes that promoted slip to the trench, Integrated Ocean Drilling Program Expedition 343/343T sailed 1 year after the earthquake and drilled into the plate boundary ∼7 km landward of the trench, in the region of maximum slip. Core analyses show that the plate boundary decollement is localized onto an interval of smectite-rich, pelagic clay. Subsidiary structures are present in both the upper and lower plates, which define a fault zone ∼5–15m thick. Fault rocks recovered from within the clay-rich interval contain a pervasive scaly fabric defined by anastomosing, polished, and lineated surfaces with two predominant orientations. The scaly fabric is crosscut in several places by discrete contacts across which the scaly fabric is truncated and rotated, or different rocks are juxtaposed. These contacts are inferred to be faults. The plate boundary decollement therefore contains structures resulting from both distributed and localized deformation. We infer that the formation of both of these types of structures is controlled by the frictional properties of the clay: the distributed scaly fabric formed at low strain rates associated with velocity-strengthening frictional behavior, and the localized faults formed at high strain rates characterized by velocity-weakening behavior. The presence of multiple discrete faults resulting from seismic slip within the decollement suggests that rupture to the trench may be characteristic of this margin.

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14,983 Research products, page 1 of 1,499
  • Authors: 
    J. K. Mortensen; Dave Craw; Doug MacKenzie; Janet Gabites;
    Publisher: Informa UK Limited

    Abstract Lead isotopic compositions were determined for sulphides from Pliocene-Pleistocene gold-bearing veins in the Alpine Schist and from Miocene gold-bearing veins and vein breccias from the Shotover-Macetown area in the northwest Otago Schist belt. The lead isotopic signatures are consistent with derivation of Pb in the vein minerals predominantly from metasedimentary rocks that underlie the region. Differences in Pb isotopic signatures between deposits are interpreted to result from lateral and vertical lithological variability within the source rock mass. The host rocks also contain metabasic rocks with N-MORB, E-MORB or within-plate basalt chemistry. However, the observed Pb isotopic signatures in the gold-bearing veins preclude incorporation of significant amounts of Pb from the metabasites. The Pb isotopic signatures of lamprophyre dikes that were intruded into the Otago Schist coeval with Miocene gold mineralisation are distinctly more radiogenic than those of the hydrothermal veins. Thus, alth...

  • Open Access
    Authors: 
    Bart Dils; M. De Mazière; J.-F. Müller; T. Blumenstock; Michael Buchwitz; R. de Beek; P. Demoulin; Pierre Duchatelet; H. Fast; Christian Frankenberg; +24 more
    Publisher: Copernicus GmbH

    Abstract. Total column amounts of CO, CH4, CO2 and N2O retrieved from SCIAMACHY nadir observations in its near-infrared channels have been compared to data from a ground-based quasi-global network of Fourier-transform infrared (FTIR) spectrometers. The SCIAMACHY data considered here have been produced by three different retrieval algorithms, WFM-DOAS (version 0.5 for CO and CH4 and version 0.4 for CO2 and N2O), IMAP-DOAS (version 1.1 and 0.9 (for CO)) and IMLM (version 6.3) and cover the January to December 2003 time period. Comparisons have been made for individual data, as well as for monthly averages. To maximize the number of reliable coincidences that satisfy the temporal and spatial collocation criteria, the SCIAMACHY data have been compared with a temporal 3rd order polynomial interpolation of the ground-based data. Particular attention has been given to the question whether SCIAMACHY observes correctly the seasonal and latitudinal variability of the target species. The present results indicate that the individual SCIAMACHY data obtained with the actual versions of the algorithms have been significantly improved, but that the quality requirements, for estimating emissions on regional scales, are not yet met. Nevertheless, possible directions for further algorithm upgrades have been identified which should result in more reliable data products in a near future.

  • Publication . Article . Preprint . 2018
    Open Access English
    Authors: 
    Lu, Xuan; Cao, Yanbin; Chen, Zhenpeng; Liu, Xuanzhe;

    Emoji is becoming a ubiquitous language and gaining worldwide popularity in recent years including the field of software engineering (SE). As nonverbal cues, emojis are widely used in user understanding tasks such as sentiment analysis, but few work has been done to study emojis in SE scenarios. This paper presents a large scale empirical study on how GitHub users use emojis in development-related communications. We find that emojis are used by a considerable proportion of GitHub users. In comparison to Internet users, developers show interesting usage characteristics and have their own interpretation of the meanings of emojis. In addition, the usage of emojis reflects a positive and supportive culture of this community. Through a manual annotation task, we find that sentimental usage is a main intention of using emojis in issues, pull requests, and comments, while emojis are mainly used to emphasize important contents in README. These findings not only deepen our understanding about the culture of SE communities, but also provide implications on how to facilitate SE tasks with emojis such as sentiment analysis.

  • Open Access
    Authors: 
    Ahmad Fauzi Ismail; Mahesh Padaki; Nidal Hilal; Takeshi Matsuura; Woei Jye Lau;
    Publisher: Elsevier BV
    Country: United Kingdom

    This paper provides a review on the recent development of thin film composite (TFC) membrane, which has received increasing attention in the field of water desalination process. The development of new thin films and substrates, and the effect of additives are mostly focused in this review. In particular, nanotechnology has shown its impact on the development of TFC membranes by incorporating nanoparticles and nanofibers in the substrate as well as in the top thin film. The search for novel monomers and novel fabrication methods of thin film, modification of substrate, and optimization of operational conditions is also the topic of this review article. It still remains a challenge to produce high impact TFC membranes with antifouling and biofouling properties, chemical resistance, improved mechanical strength and thermal stability. For this purpose, further insights into the phase inversion and interfacial polymerization processes are necessary. Currently, it seems that there is no end in the near future for the further development of TFC membranes, which will be followed by the expansion of the scope of their applications in various chemical and biochemical industrial sectors.

  • Open Access
    Authors: 
    Teresa M. Petrella; Ian Quirt; Sunil Verma; A E Haynes; Manya Charette; Kate Bak;
    Publisher: MDPI AG

    or to placebo in the treatment of metastatic melanoma. After reviewing and weighing the evidence that does exist, the opinion of the Melanoma dsg is that high-dose il-2 is a reasonable treatment option for a select group of patients with metastatic melanoma: In this select group of patients, il-2 treatment can produce durable complete remissions. High-dose il-2 is recommended to be given at 600,000 IU/kg per dose, delivered intravenously over 15 minutes, every 8 hours, for a maximum of 14 doses. High-dose il-2 delivery is recommended to be done in a tertiary-care facility by staff trained in the provision of this treatment and with appropriate monitoring. To facilitate treatment and to develop expertise in this therapeutic modality, the dsg recommends that high-dose il-2 programs be established in one or two centres in Ontario. High-dose il-2 has response rates that are similar to those seen with standard chemotherapy. However, unlike chemotherapy, il-2 demonstrates low but durable complete response rates that may lead to years of benefit for patients with metastatic melanoma. Based on the available data assessing prognostic factors and patient selection, patients with non-visceral metastases and fewer metastatic sites have a much higher response rate. In these select patients, high dose il-2 may be considered for first-line therapy. The lack of large randomized trials comparing il-2 to dtic or other chemotherapy means that recommendations for this guideline are based largely on phase ii data and limited phase iii data. Further randomized data will not soon become available, because no randomized trials are currently ongoing or planned. Interleukin-2 is currently widely used in the United States, and it is an approved therapy in both Canada and the United States. What is the role of single-agent interleukin-2 (il-2) in the treatment of adults with metastatic melanoma? If there is a role for single-agent il-2, what patient population can appropriately be considered for treatment? If there is a role for single-agent il-2, what dose and schedule are appropriate? What are the toxicities associated with il-2? Many agents have been investigated for antitumour activity in melanoma, but few have shown promising response rates. Early detection, appropriate surgery, and adjuvant therapy have all improved outcomes, but approximately one third of patients with early-stage disease will nevertheless develop metastases. Single-agent il-2 has attracted much attention over the past several years. A number of randomized trials and many phase ii trials investigating single-agent il-2 suggest that this systemic treatment produces durable responses in melanoma patients. Given the dismal survival of patients with meta-static melanoma and the limited availability of effective treatments, the Melanoma Disease Site Group (dsg) of Cancer Care Ontario&rsquo s Program in Evidence-Based Care (pebc) felt that the durable responses seen with il-2 treatment warranted closer examination. Primary outcomes of interest included objective response rate, complete response rate, duration of response, toxicity, and quality of life. Secondary outcomes of interest included progression-free survival and overall survival. A systematic review was developed, and clinical recommendations relevant to patients in Ontario were drafted. The practice guideline report was reviewed and approved by the Melanoma dsg, which comprises medical oncologists, surgeons, and dermatologists. External review by Ontario practitioners was obtained through a mailed survey, the results of which were incorporated into the practice guideline. Final review and approval of the practice guideline was obtained from the pebc&rsquo s Report Approval Panel. The present practice guideline reflects the integration of the draft recommendations based on a systematic review of the available evidence with the feedback obtained from external review by practitioners and the Report Approval Panel. No studies have compared il-2 to the current standard of care&mdash dacarbazine (dtic)&mdash

  • Open Access
    Authors: 
    Elizabeth Bancroft; Elizabeth Page; Elena Castro; Hans Lilja; Andrew J. Vickers; Daniel Sjöberg; Melissa Assel; Christopher S. Foster; Gillian Mitchell; Kate Drew; +105 more
    Publisher: Elsevier BV
    Countries: Denmark, United Kingdom, Netherlands
    Project: NIH | Improving prostate cancer... (5R01CA175491-04), NIH | Prospective validation of... (5R01CA160816-02), NIH | RATIONAL DESIGN OF PROSTA... (5P50CA092629-10)

    Background Men with germline breast cancer 1, early onset (BRCA1) or breast cancer 2, early onset (BRCA2) gene mutations have a higher risk of developing prostate cancer (PCa) than noncarriers. IMPACT (Identification of Men with a genetic predisposition to ProstAte Cancer: Targeted screening in BRCA1/2 mutation carriers and controls) is an international consortium of 62 centres in 20 countries evaluating the use of targeted PCa screening in men with BRCA1/2 mutations. Objective To report the first year's screening results for all men at enrolment in the study. Design, setting and participants We recruited men aged 40–69 yr with germline BRCA1/2 mutations and a control group of men who have tested negative for a pathogenic BRCA1 or BRCA2 mutation known to be present in their families. All men underwent prostate-specific antigen (PSA) testing at enrolment, and those men with PSA >3 ng/ml were offered prostate biopsy. Outcome measurements and statistical analysis PSA levels, PCa incidence, and tumour characteristics were evaluated. The Fisher exact test was used to compare the number of PCa cases among groups and the differences among disease types. Results and limitations We recruited 2481 men (791 BRCA1 carriers, 531 BRCA1 controls; 731 BRCA2 carriers, 428 BRCA2 controls). A total of 199 men (8%) presented with PSA >3.0 ng/ml, 162 biopsies were performed, and 59 PCas were diagnosed (18 BRCA1 carriers, 10 BRCA1 controls; 24 BRCA2 carriers, 7 BRCA2 controls); 66% of the tumours were classified as intermediate- or high-risk disease. The positive predictive value (PPV) for biopsy using a PSA threshold of 3.0 ng/ml in BRCA2 mutation carriers was 48%—double the PPV reported in population screening studies. A significant difference in detecting intermediate- or high-risk disease was observed in BRCA2 carriers. Ninety-five percent of the men were white, thus the results cannot be generalised to all ethnic groups. Conclusions The IMPACT screening network will be useful for targeted PCa screening studies in men with germline genetic risk variants as they are discovered. These preliminary results support the use of targeted PSA screening based on BRCA genotype and show that this screening yields a high proportion of aggressive disease. Patient summary In this report, we demonstrate that germline genetic markers can be used to identify men at higher risk of prostate cancer. Targeting screening at these men resulted in the identification of tumours that were more likely to require treatment. Take Home Message This report demonstrates that germline genetic markers can be used to identify men at higher risk of prostate cancer. Targeting screening at these higher-risk men resulted in the identification of tumours that were more likely to require treatment.

  • Publication . Article . 2009
    Open Access English
    Authors: 
    Michael H. Albert; Julian West;
    Publisher: episciences.org

    Nous définissons un cycle universel pour une classe de $n$-permutations comme un mot cyclique dans lequel chaque élément de la classe apparaît une unique fois comme $n$-facteur. Nous donnons un résultat général pour les classes cycliquement closes, et détaillons la situation où la classe de permutations est définie par motifs exclus, avec des motifs de taille $3$, ou bien à la fois des motifs de taille $3$ et de taille $4$. We define a universal cycle for a class of $n$-permutations as a cyclic word in which each element of the class occurs exactly once as an $n$-factor. We give a general result for cyclically closed classes, and then survey the situation when the class is defined as the avoidance class of a set of permutations of length $3$, or of a set of permutations of mixed lengths $3$ and $4$.

  • Closed Access English
    Authors: 
    Javier Cortes; David W. Cescon; Hope S. Rugo; Zbigniew Nowecki; Seock-Ah Im; Mastura Md Yusof; Carlos Gallardo; Oleg Lipatov; Carlos H. Barrios; Esther Holgado; +190 more
    Publisher: Lancet Publishing Group
    Country: Turkey

    JC reports personal fees and research funding paid to his institution from Roche, AstraZeneca, Merck Sharp & Dohme, and Eisai; personal fees from Celgene, Cellestia, Biothera Pharmaceutical, Merus, Seattle Genetics, Daiichi Sankyo, Erytech, Athenex, Polyphor, Lilly, Servier, GlaxoSmithKline, Leuko, Bioasis, Clovis Oncology, Boehringer Ingelheim, Kyowa Kirin, Novartis, Pfizer, Samsung Bioepis; research funding paid to his institution from Ariad Pharmaceuticals, Bayer Healthcare, F Hoffman-La Roche, Guardanth Health, Piqur Therapeutics, Puma C, and Queen Mary University of London, outside the submitted work. In addition, JC has a MedSIR patent pending. DWC reports research support from Merck during the conduct of the study; research support paid to his institution from Merck, Pfizer, and GlaxoSmithKline; personal fees from Merck, Roche–Genentech, AstraZeneca, GlaxoSmithKline, Novartis, Pfizer, Puma, Agenda, Exact Sciences, and Dynamo Therapeutics, outside the submitted work. In addition, DWC has a Biomarkers of TTK inhibitors patent pending. HSR reports funding for sponsored studies paid to the University of California San Francisco from Pfizer, Novartis, Lilly, Roche–Genentech, Macrogenics, OBI, Merck, Eisai, Immunomedics, Daiichi Sankyo, Seattle Genetics, and Odonate; travel support for educational meetings from Daiichi Sankyo, Mylan, Pfizer, Merck, AstraZeneca, Novartis, and Macrogenics; and consulting fees from Samsung and Puma, outside the submitted work. S-AI reports grants from AstraZeneca, Eisai, Pfizer, Roche, and Daewoong; an advisory role for AstraZeneca, Amgen, Eisai, Hanmi, Novartis, Lily, MedPacto, Pfizer, and Roche; and travel expenses for presentation from Novartis, outside the submitted work. CG reports Advisory Board fees from Merck Sharp & Dohme and Roche; and speaker's bureau fees from Bristol Myers Squibb and AstraZeneca, outside the submitted work. CHB reports grants and fees from Merck Sharp & Dohme for clinical research consulting during the conduct of the study; consulting–advisory role fees from Boehringer Ingelheim, GlaxoSmithKline, and Bayer; consulting–advisory role fees and grants for clinical research from Novartis, Pfizer, Roche–Genentech, Eisai, Merck Sharp & Dohme, and AstraZeneca; grants for clinical research from Abbvie, Amgen, Astellas Pharma, Bristol Myers Squibb, Celgene, Covance, Lilly, Medication, Merck Serono, and PharmaMar; grants for academic research projects from CPO, Pontificia Universidade Católica do Rio Grande do Sul, Latin American Cooperative Oncology Group, Grupo Brasileiro Estudos Câncer Mama, and Instituto Nacional de Câncer-Brazil, outside the submitted work. HI reports a grant from Merck Sharp & Dohme during the conduct of the study; honoraria and consulting fees from Novartis, AstraZeneca, Pfizer, Lilly, Daiichi Sankyo, Eisai, and Chugai; and a grant from Chugai, outside the submitted work. NM reports honoraria and research funding paid to his institution from Chugai, AstraZeneca, Pfizer, Eli-Lilly, Eisai, Takeda, Kyowa-Kirin, Merck Sharp & Dohme, Novartis, and Daiichi Sankyo, outside the submitted work. EG reports non-financial support from Merck Sharp & Dohme during the conduct of the study; honoraria, consulting–advisory fees and meeting support from Novartis, Roche, Bristol Myers Squibb, and Pfizer; and honoraria from AstraZeneca and Astellas, outside the submitted work. SL reports research funding or consulting fees paid to her institution from Bristol Myers Squibb, Roche–Genentech, Puma Biotechnology, Pfizer, Seattle Genetics, Novartis, Merck Sharp & Dohme, Eli Lilly, Aduro Biotech, GI Therapeutics, AstraZeneca, and GlaxoSmithKline; and non-remunerated consultancy for Bristol Myers Squibb, Roche–Genentech, Pfizer, Seattle Genetics, Novartis, Merck Sharp & Dohme, and AstraZeneca, outside the submitted work. In addition, SL is supported by the National Breast Cancer Foundation of Australia Endowed Chair and the Breast Cancer Research Foundation, New York. ZG, JZ, GA, and VK are employees of Merck Sharp & Dohme and own stock or stock options in Merck. PS reports consultancy fees from Pfizer, AstraZeneca, Novartis, Roche, Merck Sharp & Dohme, Boehringer Ingelheim, Bayer, Eisai, Celgene, and Puma; consultancy fees to his spouse from Genentech and Roche; and grants or funding to his institution from Roche, Genentech, Oncogenex, Novartis, Astellas, and AstraZeneca, outside the submitted work. All other authors declare no competing interests. Background: Pembrolizumab monotherapy showed durable antitumour activity and manageable safety in patients with metastatic triple-negative breast cancer. We aimed to examine whether the addition of pembrolizumab would enhance the antitumour activity of chemotherapy in patients with metastatic triple-negative breast cancer. Methods: In this randomised, placebo-controlled, double-blind, phase 3 trial, done in 209 sites in 29 countries, we randomly assigned patients 2:1 with untreated locally recurrent inoperable or metastatic triple-negative breast cancer using a block method (block size of six) and an interactive voice-response system with integrated web-response to pembrolizumab (200 mg) every 3 weeks plus chemotherapy (nab-paclitaxel; paclitaxel; or gemcitabine plus carboplatin) or placebo plus chemotherapy. Randomisation was stratified by type of on-study chemotherapy (taxane or gemcitabine–carboplatin), PD-L1 expression at baseline (combined positive score [CPS] ?1 or <1), and previous treatment with the same class of chemotherapy in the neoadjuvant or adjuvant setting (yes or no). Eligibility criteria included age at least 18 years, centrally confirmed triple-negative breast cancer; at least one measurable lesion; provision of a newly obtained tumour sample for determination of triple-negative breast cancer status and PD-L1 status by immunohistochemistry at a central laboratory; an Eastern Cooperative Oncology Group performance status score 0 or 1; and adequate organ function. The sponsor, investigators, other study site staff (except for the unmasked pharmacist), and patients were masked to pembrolizumab versus saline placebo administration. In addition, the sponsor, the investigators, other study site staff, and patients were masked to patient-level tumour PD-L1 biomarker results. Dual primary efficacy endpoints were progression-free survival and overall survival assessed in the PD-L1 CPS of 10 or more, CPS of 1 or more, and intention-to-treat populations. The definitive assessment of progression-free survival was done at this interim analysis; follow-up to assess overall survival is continuing. For progression-free survival, a hierarchical testing strategy was used, such that testing was done first in patients with CPS of 10 or more (prespecified statistical criterion was ?=0·00411 at this interim analysis), then in patients with CPS of 1 or more (?=0·00111 at this interim analysis, with partial alpha from progression-free survival in patients with CPS of 10 or more passed over), and finally in the intention-to-treat population (?=0·00111 at this interim analysis). This study is registered with ClinicalTrials.gov, NCT02819518, and is ongoing. Findings: Between Jan 9, 2017, and June 12, 2018, of 1372 patients screened, 847 were randomly assigned to treatment, with 566 patients in the pembrolizumab–chemotherapy group and 281 patients in the placebo–chemotherapy group. At the second interim analysis (data cutoff, Dec 11, 2019), median follow-up was 25·9 months (IQR 22·8–29·9) in the pembrolizumab–chemotherapy group and 26·3 months (22·7–29·7) in the placebo–chemotherapy group. Among patients with CPS of 10 or more, median progression-free survival was 9·7 months with pembrolizumab–chemotherapy and 5·6 months with placebo–chemotherapy (hazard ratio [HR] for progression or death, 0·65, 95% CI 0·49–0·86; one-sided p=0·0012 [primary objective met]). Median progression-free survival was 7·6 and 5·6 months (HR, 0·74, 0·61–0·90; one-sided p=0·0014 [not significant]) among patients with CPS of 1 or more and 7·5 and 5·6 months (HR, 0·82, 0·69–0·97 [not tested]) among the intention-to-treat population. The pembrolizumab treatment effect increased with PD-L1 enrichment. Grade 3–5 treatment-related adverse event rates were 68% in the pembrolizumab–chemotherapy group and 67% in the placebo–chemotherapy group, including death in <1% in the pembrolizumab–chemotherapy group and 0% in the placebo–chemotherapy group. Interpretation: Pembrolizumab–chemotherapy showed a significant and clinically meaningful improvement in progression-free survival versus placebo–chemotherapy among patients with metastatic triple-negative breast cancer with CPS of 10 or more. These findings suggest a role for the addition of pembrolizumab to standard chemotherapy for the first-line treatment of metastatic triple-negative breast cancer. Funding: Merck Sharp & Dohme Corp, a subsidiary of Merck & Co, Inc. © 2020 Elsevier Ltd The authors thank the patients, their families and caregivers for participating in this trial, all of the investigators and site personnel, and the following employees of Merck Sharp & Dohme: Wilbur Pan, Deborah Card, Eleanor Readinger, Shana Hamm, Roger Maxwell, and Krystal Bourdon, for collection of data, supervision of research, provision of study materials or patients or administrative or logistical support; Aline Galvao, for collection of data, supervision of research, administrative or logistical support, and review of imaging data related to the primary end point; Donna Letizia, for collection of data and imaging expertise; Jennifer Kimmel, for study management; Mercedes Bustamante, for data collection and management; Xuan Zhou and Madhusudhan Reddy Papasani, for statistical expertise; Christine McCrary Sisk, for medical writing and editorial assistance; and Joseph C Naggar and Michele McColgan, for administrative or logistical support. Breast Cancer Research Foundation, BCRF; Pfizer; AstraZeneca; Merck; Roche; Samsung; Merck Sharp and Dohme, MSD; Eisai

  • Open Access English
    Authors: 
    Sahadevan Seena; Felix Bärlocher; Olímpia Sobral; Mark O. Gessner; David Dudgeon; Brendan G. McKie; Eric Chauvet; Luz Boyero; Verónica Ferreira; André Frainer; +22 more
    Publisher: Elsevier
    Countries: France, Italy, Argentina
    Project: FCT | UID/MAR/04292/2013 (UID/MAR/04292/2013), FCT | PEst-OE/BIA/UI4050/2014 (PEst-OE/BIA/UI4050/2014), FCT | PTDC/AAG-GLO/3896/2012 (PTDC/AAG-GLO/3896/2012), FCT | EXPL/AAG-GLO/0189/2013 (EXPL/AAG-GLO/0189/2013), FCT | SFRH/BPD/103865/2014 (SFRH/BPD/103865/2014)

    Global patterns of biodiversity have emerged for soil microorganisms, plants and animals, and the extraordinary significance of microbial functions in ecosystems is also well established. Virtually unknown, however, are large-scale patterns of microbial diversity in freshwaters, although these aquatic ecosystems are hotspots of biodiversity and biogeochemical processes. Here we report on the first large-scale study of biodiversity of leaf-litter fungi in streams along a latitudinal gradient unravelled by Illumina sequencing. The study is based on fungal communities colonizing standardized plant litter in 19 globally distributed stream locations between 69°N and 44°S. Fungal richness suggests a hump-shaped distribution along the latitudinal gradient. Strikingly, community composition of fungi was more clearly related to thermal preferences than to biogeography. Our results suggest that identifying differences in key environmental drivers, such as temperature, among taxa and ecosystem types is critical to unravel the global patterns of aquatic fungal diversity. Fil: Seena, Sahadevan. Universidade do Minho; Portugal. Universidad de Coimbra; Portugal Fil: Bärlocher, Felix. Mount Allison University; Canadá Fil: Sobral, Olímpia. Universidade do Minho; Portugal. Universidad de Coimbra; Portugal Fil: Gessner, Mark O.. Leibniz - Institute of Freshwater Ecology and Inland Fisheries; Alemania. Technishe Universitat Berlin; Alemania. Berlin-Brandenburgischen Instituts für Biodiversitätsforschung; Alemania Fil: Dudgeon, David. University of Hong Kong; Hong Kong Fil: McKie, Brendan. Sveriges Lantbruksuniversitet; Suecia Fil: Chauvet, Eric. Institut National des postes et télécommunications; Francia. Centre National de la Recherche Scientifique; Francia. Université Paul Sabatier; Francia Fil: Boyero, Luz. James Cook University; Australia. Universidad del País Vasco; España. Ikerbasque; España Fil: Ferreira, Verónica. Universidad de Coimbra; Portugal Fil: Frainer, André. UiT The Arctic University of Norway; Noruega Fil: Bruder, Andreas. University of Otago; Nueva Zelanda Fil: Matthaei, Christoph. University of Otago; Nueva Zelanda Fil: Fenoglio, Stefano. Università degli Studi del Piemonte Orientale Amedeo Avogadro; Italia Fil: Sridhar, Kandikere. Mangalore University; India Fil: Albariño, Ricardo Javier. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto de Investigaciones en Biodiversidad y Medioambiente. Universidad Nacional del Comahue. Centro Regional Universidad Bariloche. Instituto de Investigaciones en Biodiversidad y Medioambiente; Argentina. Universidad Nacional del Comahue. Centro Regional Universitario Bariloche. Laboratorio de Fotobiología; Argentina Fil: Douglas, Michael M.. University of Western Australia; Australia. Charles Darwin University; Australia Fil: Encalada, Andrea C.. Universidad de Coimbra; Portugal. Universidad San Francisco de Quito; Ecuador Fil: Garcia, Erica. Charles Darwin University; Australia Fil: Ghate, Sudeep. Yenepoya University. Yenepoya Research Center; India. Mangalore University; India Fil: Giling, Darren P.. Leibniz - Institute of Freshwater Ecology and Inland Fisheries; Alemania. Universitat Jena; Alemania Fil: Gonçalves, Vítor. Universidade dos Açores. Centro de Investigação em Biodiversidade e Recursos Genéticos; Portugal Fil: Iwata, Tomoya. University of Yamanashi; Japón Fil: Landeira Dabarca, Andrea. Universidad San Francisco de Quito; Ecuador Fil: McMaster, Damien. Charles Darwin University; Australia Fil: Medeiros, Adriana O.. Universidade Federal da Bahia; Brasil Fil: Naggea, Josheena. Monash University Malaysia; Malasia Fil: Pozo, Jesús. Universidad del País Vasco; España Fil: Raposeiro, Pedro. Universidade dos Açores; Portugal Fil: Swan, Christopher M.. University of Maryland; Estados Unidos Fil: Tenkiano, Nathalie S. D.. Université Julius N'yerere de Kankan; Guinea Fil: Yule, Catherine Mary. University of the Sunshine Coast; Australia. Monash University Malaysia; Malasia Fil: Graça, Manuel A. S.. Universidad de Coimbra; Portugal

  • Open Access English
    Authors: 
    James D. Kirkpatrick; Christie D. Rowe; Kohtaro Ujiie; J. Casey Moore; Christine Regalla; Francesca Remitti; Virginia Toy; M. Wolfson-Schwehr; Jun Kameda; Santanu Bose; +1 more
    Country: Italy

    The 2011 Mw9.0 Tohoku-oki earthquake ruptured to the trench with maximum coseismic slip located on the shallow portion of the plate boundary fault. To investigate the conditions and physical processes that promoted slip to the trench, Integrated Ocean Drilling Program Expedition 343/343T sailed 1 year after the earthquake and drilled into the plate boundary ∼7 km landward of the trench, in the region of maximum slip. Core analyses show that the plate boundary decollement is localized onto an interval of smectite-rich, pelagic clay. Subsidiary structures are present in both the upper and lower plates, which define a fault zone ∼5–15m thick. Fault rocks recovered from within the clay-rich interval contain a pervasive scaly fabric defined by anastomosing, polished, and lineated surfaces with two predominant orientations. The scaly fabric is crosscut in several places by discrete contacts across which the scaly fabric is truncated and rotated, or different rocks are juxtaposed. These contacts are inferred to be faults. The plate boundary decollement therefore contains structures resulting from both distributed and localized deformation. We infer that the formation of both of these types of structures is controlled by the frictional properties of the clay: the distributed scaly fabric formed at low strain rates associated with velocity-strengthening frictional behavior, and the localized faults formed at high strain rates characterized by velocity-weakening behavior. The presence of multiple discrete faults resulting from seismic slip within the decollement suggests that rupture to the trench may be characteristic of this margin.