research data . Dataset . 2017

Additional file 10: of Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome

Cheung, Warren; Xiaojian Shao; Morin, Andréanne; Siroux, Valérie; Kwan, Tony; Ge, Bing; Aïssi, Dylan; Chen, Lu; Vasquez, Louella; Allum, Fiona; ...

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Open Access

Published: 01 Jan 2017

Publisher: Figshare

Summary
Supplementary outcomes

Abstract

Source code. This file contains the code for generating the ASM p values: Get_CpG.SNP.pairs.mergedSamples.Profile.PhasedAlleles.pl (.pl perl code script), Get_ASMsite_FisherTesting.PhasedAlleles.MergedReads.r (.R R statistics script); the code for generating the GIT p values: Get_CpG.SNP.pairs.mergedSamples.Profile.FlippedHL.pl (.pl perl code script), Get_ASMsite_FisherTesting.FlippedHL.MergedReads.r (.R R statistics script); and the code for the GIT q value statistic correction: GIT-qvalue.correction.R (.R R statistics code script). (ZIP 8 kb)

Persistent Identifiers

doi: 10.6084/m9.figshare.c.3714919_d1.v1 , 10.6084/m9.figshare.c.3714919_d1

Funded by

ANR| RESET-AID Consortium, UKRI| Study of the interplay of genetic, biochemical, and lifestyle factors on coronary heart disease incidence, WT, CIHR

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figshare

Dataset . 2017

Provider: Datacite

figshare

Dataset . 2017

Provider: Datacite

Outcomes Supplemented by this research data

2017
Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome

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