research data . Dataset . 2017

Additional file 10: of Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome

Cheung, Warren; Xiaojian Shao; Morin, Andréanne; Siroux, Valérie; Kwan, Tony; Ge, Bing; Aïssi, Dylan; Chen, Lu; Vasquez, Louella; Allum, Fiona; ...
Open Access
  • Published: 01 Jan 2017
  • Publisher: Figshare
Abstract
Source code. This file contains the code for generating the ASM p values: Get_CpG.SNP.pairs.mergedSamples.Profile.PhasedAlleles.pl (.pl perl code script), Get_ASMsite_FisherTesting.PhasedAlleles.MergedReads.r (.R R statistics script); the code for generating the GIT p values: Get_CpG.SNP.pairs.mergedSamples.Profile.FlippedHL.pl (.pl perl code script), Get_ASMsite_FisherTesting.FlippedHL.MergedReads.r (.R R statistics script); and the code for the GIT q value statistic correction: GIT-qvalue.correction.R (.R R statistics code script). (ZIP 8 kb)
Funded by
ANR| RESET-AID Consortium
Project
RESET-AID Consortium
REsolving Systems Epigenomes of T-cells from Autoimmune and Inflammatory Disease patients
  • Funder: French National Research Agency (ANR) (ANR)
  • Project Code: ANR-15-EPIG-0004
,
UKRI| Study of the interplay of genetic, biochemical, and lifestyle factors on coronary heart disease incidence
Project
  • Funder: UK Research and Innovation (UKRI)
  • Project Code: G0800270
  • Funding stream: MRC
,
WT
Project
  • Funder: Wellcome Trust (WT)
,
CIHR
Project
  • Funder: Canadian Institutes of Health Research (CIHR)
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Open Access
figshare
Dataset . 2017
Provider: Datacite
Open Access
figshare
Dataset . 2017
Provider: Datacite
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