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Research data . 2018
Research data supporting "Common variation in genes encoding small GTPases and ovarian cancer risk": GTPases candidate gene SNP genotypes

Authors:
Pharoah, PDP;
Pharoah, PDP;
doi: 10.17863/cam.20843
doi: 10.17863/cam.20843
Country: United Kingdom
Project: NIH | Regulatory T Cell Functio... (5R01CA126841-04), NIH | CASE-CONTROL STUDY OF OVA... (1R01CA061132-01), NIH | UCLA Clinical and Transla... (5UL1TR000124-04), NIH | SURVEILLANCE EPIDEMIOLOGY... (N01CN055424-007), NHMRC | Molecular Epidemiology of... (400281), NIH | DIET, HORMONES AND RISK O... (3P01CA087969-03S1), NIH | USC COMPREHENSIVE CANCER ... (3P30CA014089-17S1), NIH | HEREDITARY BREAST CANCER-... (5R01CA058860-02), NIH | Inflammation and Ovarian ... (5R01CA095023-03), NIH | Premenopausal Hormone Lev... (5R01CA067262-08),...
Genotype data and related phenotype data for Ovarian Cancer Association Consortium project investigating common variantion in GTPAse genes and ovarian cancer risk
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Research data . 2019
Additional file 5: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci
Open Access
Authors:
Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; Tyndale, Rachel; Velagapudi, Vidya; Dorret Boomsma; Korhonen, Tellervo; Kaprio, Jaakko; Loukola, Anu; +1 more
Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; Tyndale, Rachel; Velagapudi, Vidya; Dorret Boomsma; Korhonen, Tellervo; Kaprio, Jaakko; Loukola, Anu; Ollikainen, Miina;
doi: 10.6084/m9.figshare.7551749 , 10.6084/m9.figshare.7551749.v1
doi: 10.6084/m9.figshare.7551749 , 10.6084/m9.figshare.7551749.v1
Publisher: figshare
Project: AKA | Center of Excellence in C... (129680), AKA | CoE in Complex Disease Ge... (213506), EC | GMI (230374), NWO | BBMRI-NL (2300154272), AKA | Epigenetic pathways to ob... (297908), CIHR , AKA | Genomic epidemiology of a... (263278), AKA | Genomic epidemiology of a... (265240)
Table S3. Cis acting methylation quantitative trait loci in the 40 genes highlighted in the EWAS. (XLS 31 kb)
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Research data . 2019
MOESM1 of BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification
Open Access
Authors:
Djoumbou-Feunang, Yannick; Jarlei Fiamoncini; Gil-De-La-Fuente, Alberto; Greiner, Russell; Manach, Claudine; Wishart, David;
Djoumbou-Feunang, Yannick; Jarlei Fiamoncini; Gil-De-La-Fuente, Alberto; Greiner, Russell; Manach, Claudine; Wishart, David;
doi: 10.6084/m9.figshare.7551605.v1 , 10.6084/m9.figshare.7551605
doi: 10.6084/m9.figshare.7551605.v1 , 10.6084/m9.figshare.7551605
Publisher: figshare
Project: CIHR , ANR | FOODBALL (ANR-14-HDHL-0002)
Additional file 1. Cited structures.
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Research data . 2019
Additional file 10: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci
Open Access
Authors:
Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; Tyndale, Rachel; Velagapudi, Vidya; Dorret Boomsma; Korhonen, Tellervo; Kaprio, Jaakko; Loukola, Anu; +1 more
Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; Tyndale, Rachel; Velagapudi, Vidya; Dorret Boomsma; Korhonen, Tellervo; Kaprio, Jaakko; Loukola, Anu; Ollikainen, Miina;
doi: 10.6084/m9.figshare.7551686 , 10.6084/m9.figshare.7551686.v1
doi: 10.6084/m9.figshare.7551686 , 10.6084/m9.figshare.7551686.v1
Publisher: figshare
Project: AKA | CoE in Complex Disease Ge... (213506), CIHR , AKA | Genomic epidemiology of a... (263278), AKA | Center of Excellence in C... (129680), EC | GMI (230374), AKA | Genomic epidemiology of a... (265240), NWO | BBMRI-NL (2300154272), AKA | Epigenetic pathways to ob... (297908)
Table S7. CpG sites showing significant (FDR pâ
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Research data . 2019
Additional file 12: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci
Open Access
Authors:
Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; Tyndale, Rachel; Velagapudi, Vidya; Dorret Boomsma; Korhonen, Tellervo; Kaprio, Jaakko; Loukola, Anu; +1 more
Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; Tyndale, Rachel; Velagapudi, Vidya; Dorret Boomsma; Korhonen, Tellervo; Kaprio, Jaakko; Loukola, Anu; Ollikainen, Miina;
doi: 10.6084/m9.figshare.7551698 , 10.6084/m9.figshare.7551698.v1
doi: 10.6084/m9.figshare.7551698 , 10.6084/m9.figshare.7551698.v1
Publisher: figshare
Project: AKA | Center of Excellence in C... (129680), CIHR , EC | GMI (230374), AKA | Genomic epidemiology of a... (263278), NWO | BBMRI-NL (2300154272), AKA | Epigenetic pathways to ob... (297908), AKA | CoE in Complex Disease Ge... (213506), AKA | Genomic epidemiology of a... (265240)
Table S9. Literature search results for smoking EWAS. (XLS 9 kb)
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Research data . 2019
Additional file 8: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci
Open Access
Authors:
Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; Tyndale, Rachel; Velagapudi, Vidya; Dorret Boomsma; Korhonen, Tellervo; Kaprio, Jaakko; Loukola, Anu; +1 more
Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; Tyndale, Rachel; Velagapudi, Vidya; Dorret Boomsma; Korhonen, Tellervo; Kaprio, Jaakko; Loukola, Anu; Ollikainen, Miina;
doi: 10.6084/m9.figshare.7551761 , 10.6084/m9.figshare.7551761.v1
doi: 10.6084/m9.figshare.7551761 , 10.6084/m9.figshare.7551761.v1
Publisher: figshare
Project: AKA | CoE in Complex Disease Ge... (213506), AKA | Genomic epidemiology of a... (263278), EC | GMI (230374), AKA | Genomic epidemiology of a... (265240), NWO | BBMRI-NL (2300154272), AKA | Epigenetic pathways to ob... (297908), AKA | Center of Excellence in C... (129680), CIHR
Table S5. Mediation analysis omnibus P values for the 19 meQTLs associated with serum cotinine levels. (XLS 33 kb)
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Research data . 2019
MOESM5 of BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification
Open Access
Authors:
Djoumbou-Feunang, Yannick; Jarlei Fiamoncini; Gil-De-La-Fuente, Alberto; Greiner, Russell; Manach, Claudine; Wishart, David;
Djoumbou-Feunang, Yannick; Jarlei Fiamoncini; Gil-De-La-Fuente, Alberto; Greiner, Russell; Manach, Claudine; Wishart, David;
doi: 10.6084/m9.figshare.7551641 , 10.6084/m9.figshare.7551641.v1
doi: 10.6084/m9.figshare.7551641 , 10.6084/m9.figshare.7551641.v1
Publisher: figshare
Project: CIHR , ANR | FOODBALL (ANR-14-HDHL-0002)
Additional file 5. BioTransformerâ human and human gut microbial metabolism.
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Research data . 2017
Additional file 1: of Medium throughput bisulfite sequencing for accurate detection of 5-methylcytosine and 5-hydroxymethylcytosine
Open Access
Authors:
Chen, Gary; Gross, Jeffrey; Pierre-Eric Lutz; Vaillancourt, Kathryn; Maussion, Gilles; Bramoulle, Alexandre; Jean-François Théroux; Gardini, Elena; Ehlert, Ulrike; Bourret, Geneviève; +5 more
Chen, Gary; Gross, Jeffrey; Pierre-Eric Lutz; Vaillancourt, Kathryn; Maussion, Gilles; Bramoulle, Alexandre; Jean-François Théroux; Gardini, Elena; Ehlert, Ulrike; Bourret, Geneviève; Masurel, Aurélie; Lepage, Pierre; Naguib Mechawar; Turecki, Gustavo; Ernst, Carl;
doi: 10.6084/m9.figshare.c.3668731_d5 , 10.6084/m9.figshare.c.3668731_d5.v1
doi: 10.6084/m9.figshare.c.3668731_d5 , 10.6084/m9.figshare.c.3668731_d5.v1
Publisher: Figshare
Project: NIH | Epigenetic Marks of Cocai... (1R01DA033684-01), CIHR
Sequences of universal primers and indices used to achieve the multiplexing of up to 478 samples. (XLSX 9 kb)
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Research data . 2017
Additional file 4: of Medium throughput bisulfite sequencing for accurate detection of 5-methylcytosine and 5-hydroxymethylcytosine
Open Access
Authors:
Chen, Gary; Gross, Jeffrey; Pierre-Eric Lutz; Vaillancourt, Kathryn; Maussion, Gilles; Bramoulle, Alexandre; Jean-François Théroux; Gardini, Elena; Ehlert, Ulrike; Bourret, Geneviève; +5 more
Chen, Gary; Gross, Jeffrey; Pierre-Eric Lutz; Vaillancourt, Kathryn; Maussion, Gilles; Bramoulle, Alexandre; Jean-François Théroux; Gardini, Elena; Ehlert, Ulrike; Bourret, Geneviève; Masurel, Aurélie; Lepage, Pierre; Naguib Mechawar; Turecki, Gustavo; Ernst, Carl;
doi: 10.6084/m9.figshare.c.3668731_d1 , 10.6084/m9.figshare.c.3668731_d1.v1
doi: 10.6084/m9.figshare.c.3668731_d1 , 10.6084/m9.figshare.c.3668731_d1.v1
Publisher: Figshare
Project: CIHR , NIH | Epigenetic Marks of Cocai... (1R01DA033684-01)
Primers used for amplification of genomic DNA in oxBS experiments (Fig. 4). (XLSX 10 kb)
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Research data . 2019
MOESM9 of BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification
Open Access
Authors:
Djoumbou-Feunang, Yannick; Jarlei Fiamoncini; Gil-De-La-Fuente, Alberto; Greiner, Russell; Manach, Claudine; Wishart, David;
Djoumbou-Feunang, Yannick; Jarlei Fiamoncini; Gil-De-La-Fuente, Alberto; Greiner, Russell; Manach, Claudine; Wishart, David;
doi: 10.6084/m9.figshare.7551662.v1 , 10.6084/m9.figshare.7551662
doi: 10.6084/m9.figshare.7551662.v1 , 10.6084/m9.figshare.7551662
Publisher: figshare
Project: CIHR , ANR | FOODBALL (ANR-14-HDHL-0002)
Additional file 9. Epicatechin metabolites identification part 2.
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28 Research products, page 1 of 3

Canada
Research data
2017-2021
Canadian Institutes of Health Research
Aurora Universities Network

Research data supporting "Common variation in genes encoding small GTPases and ovarian cancer risk": GTPases candidate gene SNP genotypes

Additional file 5: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

MOESM1 of BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification

Additional file 10: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

Additional file 12: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

Additional file 8: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

MOESM5 of BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification

Additional file 1: of Medium throughput bisulfite sequencing for accurate detection of 5-methylcytosine and 5-hydroxymethylcytosine

Additional file 4: of Medium throughput bisulfite sequencing for accurate detection of 5-methylcytosine and 5-hydroxymethylcytosine

MOESM9 of BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification

28 Research products, page 1 of 3

Research data supporting "Common variation in genes encoding small GTPases and ovarian cancer risk": GTPases candidate gene SNP genotypes

Additional file 5: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

MOESM1 of BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification

Additional file 10: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

Additional file 12: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

Additional file 8: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

MOESM5 of BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification

Additional file 1: of Medium throughput bisulfite sequencing for accurate detection of 5-methylcytosine and 5-hydroxymethylcytosine

Additional file 4: of Medium throughput bisulfite sequencing for accurate detection of 5-methylcytosine and 5-hydroxymethylcytosine

MOESM9 of BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification

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28 Research products, page 1 of 3

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28 Research products, page 1 of 3

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Canada
Research data
2017-2021
Canadian Institutes of Health Research
Aurora Universities Network