High-confidence non-genetic CpG regions. This file contains a list of genomic regions (.bed text file) containing at least 15 consecutive CpGs and where all CpGs did not show significant genetic methylation (ASM and mQTL q ≥ 0.1) but showed significant imbalanced alleli...

This file details for each cell type mean fold coverage (for CpG methylation sequencing) and total aligned reads (for RNA-Seq and ChIP-Seq). (XLSX 10 kb)

AS and NAS CpG methylation to RNA expression correlations. This mini-website describes the file format and links to individual correlation results for each cell type (.txt tab-separated text file). (ZIP 18638 kb)

Dataset S1. Raw dataset. Flower visitation dataset containing all flower visits by each individual bee over the five days of observation. (CSV 59 kb)

GREAT analysis results of the high-confidence non-genetic CpG regions. This file lists over-representation analysis results from GREAT for GO biological process, Interpro, and HGNC Gene Families. For the GO biological process analysis, child terms of the GO term “develo...

Source code. This file contains the code for generating the ASM p values: Get_CpG.SNP.pairs.mergedSamples.Profile.PhasedAlleles.pl (.pl perl code script), Get_ASMsite_FisherTesting.PhasedAlleles.MergedReads.r (.R R statistics script); the code for generating the GIT p v...

Allelic methylation in enhancer peaks. In this file, we report the ChromHMM bin and the allele-sepcific CpG methylation and RNA read coverage at CpGs within H3K27ac and H3K4me1 ChIP-Seq peaks. (XLSX 1899 kb)

Video S2. Example of “resident leaves”. Bee W25 landed on a flower occupied by bee Y35 and left second, therefore replacing bee Y35. In this example, the flower was “not-emptied” as bee Y35 fed on the flower for less than 8 s before the interaction occurred. (AVI 2069 k...

Description of MCC-Seq capture panel. This file contains: (1) summary of CpGs and genomic regions targeted by the MCC-Seq capture panel design (.xlsx Excel spreadsheet format), and (2) a list of the targeted regions (.bed text file). (ZIP 3465 kb)

Video S1. Example of “resident stays”. Bee Y67 landed on a flower occupied by bee W58 and left spontaneously. In this example, the flower was “not-emptied” as bee W58 fed on the flower for less than 8 s before the interaction occurred. (AVI 461 kb)