publication . Article . 2014

BioTextQuest+: a knowledge integration platform for literature mining and concept discovery

Papanikolaou, Nikolas; Pavlopoulos, Georgios A.; Pafilis, Evangelos; Theodosiou, Theodosios G.; Schneider, Reinhard; Satagopam, Venkata P.; Ouzounis, Christos A.; Eliopoulos, Aristides G.; Promponas, Vasilis J.; Iliopoulos, Ioannis Crete; ...

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Open Access

Published: 06 Aug 2014

Summary

Abstract

Summary The iterative process of finding relevant information in biomedical literature and performing bioinformatics analyses might result in an endless loop for an inexperienced user, considering the exponential growth of scientific corpora and the plethora of tools designed to mine PubMed(®) and related biological databases. Herein, we describe BioTextQuest(+), a web-based interactive knowledge exploration platform with significant advances to its predecessor (BioTextQuest), aiming to bridge processes such as bioentity recognition, functional annotation, document clustering and data integration towards literature mining and concept discovery. BioTextQuest(+) e...

Persistent Identifiers

doi: 10.1093/bioinformatics/btu524 , 10.1093/bioinformatics/btv029

Subjects

ACM Computing Classification System: ComputingMethodologies_PATTERNRECOGNITION

free text keywords: Genomics, Data processing, Bioinformatics, Computational biology, text-mining, : Biochemistry, biophysics & molecular biology [F05] [Life sciences], : Biochimie, biophysique & biologie moléculaire [F05] [Sciences du vivant], Internet, Publications, human, Humans, computer program, publication, gene, Genes, procedures, Medline, protein, genetics, Software, PubMed, cluster analysis, Proteins, data mining, Authorship, Disease, diseases, Medical Subject Headings, writing, Computational Mathematics, Computational Theory and Mathematics, Computer Science Applications, Molecular Biology, Biochemistry, Statistics and Probability, Web mining, Computer science, Text mining, business.industry, business, Document clustering, Biological database, Information retrieval, Software mining, Knowledge extraction, Biomedical text mining, Knowledge integration, Data integration, computer.software_genre, computer

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