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Research data . Dataset . 2017

Additional file 10: of Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome

Cheung, Warren; Xiaojian Shao; Morin, Andréanne; Siroux, Valérie; Kwan, Tony; Ge, Bing; Aïssi, Dylan; +26 Authors
Open Access

doi: 10.6084/m9.figshare.c.3714919_d1.v1 , 10.6084/m9.figshare.c.3714919_d1

Published: 01 Jan 2017
Publisher: Figshare
Abstract

Source code. This file contains the code for generating the ASM p values: Get_CpG.SNP.pairs.mergedSamples.Profile.PhasedAlleles.pl (.pl perl code script), Get_ASMsite_FisherTesting.PhasedAlleles.MergedReads.r (.R R statistics script); the code for generating the GIT p values: Get_CpG.SNP.pairs.mergedSamples.Profile.FlippedHL.pl (.pl perl code script), Get_ASMsite_FisherTesting.FlippedHL.MergedReads.r (.R R statistics script); and the code for the GIT q value statistic correction: GIT-qvalue.correction.R (.R R statistics code script). (ZIP 8 kb)

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Funded by
WT
Project
  • Funder: Wellcome Trust (WT)
, ANR| RESET-AID Consortium
Project
RESET-AID Consortium
REsolving Systems Epigenomes of T-cells from Autoimmune and Inflammatory Disease patients
  • Funder: French National Research Agency (ANR) (ANR)
  • Project Code: ANR-15-EPIG-0004
, UKRI| Study of the interplay of genetic, biochemical, and lifestyle factors on coronary heart disease incidence
Project
Study of the interplay of genetic, biochemical, and lifestyle factors on coronary heart disease incidence
  • Funder: UK Research and Innovation (UKRI)
  • Project Code: G0800270
  • Funding stream: MRC
, CIHR
Project
  • Funder: Canadian Institutes of Health Research (CIHR)
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Dataset . 2017
License: https://creativecommons.org/licenses/by/4.0
Providers: Datacite
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